SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42404

Length: 870 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene42404 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	R2R3-Myb5 transcription factor (Fragment) n=2 Tax=Pinus RepID=B1PPT8_PINPS	-	-	0.0	72%
FL-Next	tr=R2R3-MYB transcription factor MYB5; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	77%
Sma3	MYB transcription factor	-	-	1.966e-22	-

Source	Gene names
Sma3	AT4g12350; At1g09540; At1g22640; At1g35515; At2g16720; At3g02940; At3g12720; At3g13540; At3g61250; At4g05100; At4g09460; At4g21440; At4g22680; At4g28110; At4g34990; At4g38620; At5g16770; F12K8.1; F13E7.11; F14J9.20; F20M13.180; F5E19_110; GSVIVT0000390400

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	cold acclimation	GO:0009631	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	cinnamic acid biosynthetic process	GO:0009800	Biological Process	-
Sma3	negative regulation of metabolic process	GO:0009892	Biological Process	-
Sma3	trichome morphogenesis	GO:0010090	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	cuticle development	GO:0042335	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	mucilage biosynthetic process involved in seed coat development	GO:0048354	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G09460.1	AtMYB6, MYB6 myb domain protein 6 chr4:5993019-5994038 FORWARD LENGTH=236	53%
RefSeq	Arabidopsis thaliana	NP_192684.1	transcription repressor MYB6 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002306180.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

SSRs (tot: 2)

Start position	End position	Sequence	Length
29	46	CAACCT CAACCT CAACCT	18
776	787	TCT TCT TCT TCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain