SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42393

Length: 2692 nt

UniGene Fasta

>sp_v3.0_unigene42393
GACAGCTGTCATTGACAGAGTACCAAGATACTAGCCCATCCTAACTGGGACCCAGATAGCCAGATCGACAGTGCAGGGGAGGGTTGGGGAAGTAAGAGTGCAGGCCATTCAAGAAAACAATTTGAGAGTGGGGAAGGTTGAGGGAGTGTGGATTCATCATCTGCATCATGGATTTCACTTCACTGCTGACATCTCTGGGCACTTCATTTCTCATTTTCTTGCTGCTGGTTTTTGCCTTCACATGGCTGTCTAAGATGCAAGTGAACCGCGTGATCTATTTCCCCAATAAAATTGTCAAGGGGTTGGATGTATCGACCAAATCTCGCAATCCTTTTGCCTGGATTGTGGAAGCCTGGCAGGCTACTGAAGATGAGATCATCTCTATTGCTGGTCTGGATGCAGCTGTTTATCTCATATTCATCACTACTGCATTGTTAATCATGGTATTATCTGCCGGAGTTTGCTTACCAGTTCTTCTTCCTCTGAGTAAAACTGATGACAATTATAAGCTCACGTTGGAGCGGGCAAAGAACAAAACTGCTGCAAGTTATGATGATTTTGACAGGCTTGCCATGGGCAATGTTCAGAAACAGAGCAACCGATTATGGGGATTTGCAGTTGCAGCGTACTGGGTTTCGTTTGTGACATATTTTCTTCTCTGGAAAACCTACAATCACGTTCTTCGACTTAGAACAAGGGAGCAAGCTTCATTTGAGTCTAAACCAGAACAATTTGTAGTTCTCGTTCGAGATATTCCTCCTGTACCAGTTGGCAAAACACGCAAAGAACAAGTGGACTCTTTCTTCAGGAGGTTATACCCGGAAACATTTGAGACATCCTTGATTGTCACTGACATCTCCGAGGCTCACAAGGCGTGGAAGAAACTAGAAGGCTACAAAAAGAGTCTAGCTCGTGCTGAAGTCATATTTGAAAAGTCCAAGACAGTGAAGAATCCAGAGGGGATGCGACCACTGCATAAGACAGGAAGTTTGGGACTTTTGGGACCAAAAGTTGACTCTATAGATTTCTACAATGAGAAGATTAAGGATTTATCAGCCAAGCTGGAAACAAAACAAAAGATTACACTGATAGAGAAACAGGTTGCAGCAGCCTTTATAATTTTCAACAGCAGGCCTGCTGCAGCGGCTGCATCTCAGGTTGTGCATTCACAGTTTGCAGATAGATGGACTGTAATGGCTGCTCCTGAGCCTCGTCAAATACTGTGGAAAAACCTTGCCATGCCCTTCTATCAGAGGATGATTCGAGAGAAGATTGTATACATTATTGTGTTTCTAGCTATTATTTTCTACATGATTCCCATCACCTTTGTCTCTGCACTTACAACCCTTGATAATCTAAAAAAACTTCTGCCTTTTCTGAAATCGGTTGCTGATAGAAAAGCACTTAAAAGCATCCTTGAAGCTTACTTGCCTCAGCTTGCTCTGCTTGTCTTTCTGGCTTTCCTGCCCACAATTCTCATGATTCTCTCCAAGGCTGAAGGGATTCCTTCAGAAGCCCATGTAGTGAGAGCTTCCTCTGGAAAGTATTTTTACTTTATCGTGTTCAACGTTTTCCTGGGAGTTACAATAGGTGGCACCTTGTTTGAGTCCCTCAAGGCGATTGAGAAACAACCTAACTCAATCGTTACACTGCTTGGCAATTCTCTTCCTCCCAATGCTACCTTCTTCATTAGTTTTGTTGCACTCAAGTTTTTTGTAGGCTATGGGCTTGAACTTTCTCGCTTGGTGTCGCTAGTGATATACCATATCAAGAGGAAATTTCTTTGTAAGACTGAAGCAGATGTGGAAGAGGCTTGGGCTCCTGGTGGTTTTAGCTATGGTACCAGAGTTCCAAATGACATGTTGATTATCACCATTGCTCTATGCTATTCTGTTATTGCTCCCATGATCCTTCCTTTTGCCATGGTGTACTTCATTGTGGGATGGTTTGTGCTTCGGAATCAGGCACTTAATGTGTATGTGGCCTCTTATGAAAGCAATGGGATTATGTGGCCTCATATGCACACCAGGATTCTGTCAGCTTTGTTCATCTCCCAGATTACAATGATTGGGTACTTCTCAATCAAGAAATTCTATTATTCACCCTTGCTCCTTCCACTTCCACTTGTAACTCTGGTATTTGGCTATGTTTGTAACAAAAGCTTTTACGTCTCATTTTGTATCACTTCCATGGAGGTGGCTTGCAATGATGTCAAGGAAGTTCCAAGCTTGTCTTCAGTTGTGGAGGCTTTTACCCCTCCCTGTGTATTTGTGGAGGACAAGTTTGATGATGTTGAGCAATTTGAGGATGCTCGGTCCACCATTTCCTCAAGGACGACCTCTATTAATACATCCATTGCTTGACCAACCATACCTAATTCTGTTTCTCCAATTCCTTATGTGCACGAAAACAAAGATGAGAGTCAAGAGACTATTGCTGCTTTTCCCATCGTTGTAAGAATAATATGTCATTTTATATTGATAGGACCATACAAGCTTTCCAAGATCCCCAAGACGAGCACAGCTCAAGCTCTCTGTTGTAACATAGTTTAGGATGTATGGGAGCCTAGAGAGTCATGATTGTCTGTTTATCTTCTATGTCCTCTGCTTCTTGTTCATTCTATTTATTTTGTATATCGCATATGAATATGATATACAATGGCTGCTAGCTATTTTGATTTGTTTAGTTTGGC

Ace file of the UniGene sp_v3.0_unigene42393

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana] gb\|AAG51102.1\|AC025295_10 unknown protein [Arabidopsis thaliana] gb\|AAK59597.1\| unknown protein [Arabidopsis thaliana] gb\|AAL34230.1\| unknown protein [Arabidopsis thaliana] gb\|AE	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Sma3	ERD4 protein	-	-	4.967e-09	-

Source	Gene names
Sma3	At1g30360; ERD; ERD4; GSVIVT00028359001; GSVIVT00028360001; OJ1027_G06.20; Os07g0150100; OsI_24908; OsJ_23104; PHYPADRAFT_106604; PHYPADRAFT_180964; PHYPADRAFT_181889; PHYPADRAFT_194222; PHYPADRAFT_202769; PHYPADRAFT_229842; PHYPADRAFT_84744; POPTRDRAFT_1

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Domain of unknown function DUF221	IPR003864	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G30360.1	ERD4 Early-responsive to dehydration stress protein (ERD4) chr1:10715892-10718799 FORWARD LENGTH=724	53%
RefSeq	Arabidopsis thaliana	NP_564354.1	Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002300337.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKM0

Fln msg:

Fln protein: MDFTSLLTSLGTSFLIFLLLVFAFTWLSKMQVNRVIYFPNKIVKGLDVSTKSRNPFAWIVEAWQATEDEIISIAGLDAAVYLIFITTALLIMVLSAGVCLPVLLPLSKTDDNYKLTLERAKNKTAASYDDFDRLAMGNVQKQSNRLWGFAVAAYWVSFVTYFLLWKTYNHVLRLRTREQASFESKPEQFVVLVRDIPPVPVGKTRKEQVDSFFRRLYPETFETSLIVTDISEAHKAWKKLEGYKKSLARAEVIFEKSKTVKNPEGMRPLHKTGSLGLLGPKVDSIDFYNEKIKDLSAKLETKQKITLIEKQVAAAFIIFNSRPAAAAASQVVHSQFADRWTVMAAPEPRQILWKNLAMPFYQRMIREKIVYIIVFLAIIFYMIPITFVSALTTLDNLKKLLPFLKSVADRKALKSILEAYLPQLALLVFLAFLPTILMILSKAEGIPSEAHVVRASSGKYFYFIVFNVFLGVTIGGTLFESLKAIEKQPNSIVTLLGNSLPPNATFFISFVALKFFVGYGLELSRLVSLVIYHIKRKFLCKTEADVEEAWAPGGFSYGTRVPNDMLIITIALCYSVIAPMILPFAMVYFIVGWFVLRNQALNVYVASYESNGIMWPHMHTRILSALFISQITMIGYFSIKKFYYSPLLLPLPLVTLVFGYVCNKSFYVSFCITSMEVACNDVKEVPSLSSVVEAFTPPCVFVEDKFDDVEQFEDARSTISSRTTSINTSIA*

Protein Length: 733

Fln nts: GACAGCTGTCATTGACAGAGTACCAAGATACTAGCCCATCCTAACTGGGACCCAGATAGCCAGATCGACAGTGCAGGGGAGGGTTGGGGAAGTAAGAGTGCAGGCCATTCAAGAAAACAATTTGAGAGTGGGGAAGGTTGAGGGAGTGTGGATTCATCATCTGCATC_-_ATGGATTTCACTTCACTGCTGACATCTCTGGGCACTTCATTTCTCATTTTCTTGCTGCTGGTTTTTGCCTTCACATGGCTGTCTAAGATGCAAGTGAACCGCGTGATCTATTTCCCCAATAAAATTGTCAAGGGGTTGGATGTATCGACCAAATCTCGCAATCCTTTTGCCTGGATTGTGGAAGCCTGGCAGGCTACTGAAGATGAGATCATCTCTATTGCTGGTCTGGATGCAGCTGTTTATCTCATATTCATCACTACTGCATTGTTAATCATGGTATTATCTGCCGGAGTTTGCTTACCAGTTCTTCTTCCTCTGAGTAAAACTGATGACAATTATAAGCTCACGTTGGAGCGGGCAAAGAACAAAACTGCTGCAAGTTATGATGATTTTGACAGGCTTGCCATGGGCAATGTTCAGAAACAGAGCAACCGATTATGGGGATTTGCAGTTGCAGCGTACTGGGTTTCGTTTGTGACATATTTTCTTCTCTGGAAAACCTACAATCACGTTCTTCGACTTAGAACAAGGGAGCAAGCTTCATTTGAGTCTAAACCAGAACAATTTGTAGTTCTCGTTCGAGATATTCCTCCTGTACCAGTTGGCAAAACACGCAAAGAACAAGTGGACTCTTTCTTCAGGAGGTTATACCCGGAAACATTTGAGACATCCTTGATTGTCACTGACATCTCCGAGGCTCACAAGGCGTGGAAGAAACTAGAAGGCTACAAAAAGAGTCTAGCTCGTGCTGAAGTCATATTTGAAAAGTCCAAGACAGTGAAGAATCCAGAGGGGATGCGACCACTGCATAAGACAGGAAGTTTGGGACTTTTGGGACCAAAAGTTGACTCTATAGATTTCTACAATGAGAAGATTAAGGATTTATCAGCCAAGCTGGAAACAAAACAAAAGATTACACTGATAGAGAAACAGGTTGCAGCAGCCTTTATAATTTTCAACAGCAGGCCTGCTGCAGCGGCTGCATCTCAGGTTGTGCATTCACAGTTTGCAGATAGATGGACTGTAATGGCTGCTCCTGAGCCTCGTCAAATACTGTGGAAAAACCTTGCCATGCCCTTCTATCAGAGGATGATTCGAGAGAAGATTGTATACATTATTGTGTTTCTAGCTATTATTTTCTACATGATTCCCATCACCTTTGTCTCTGCACTTACAACCCTTGATAATCTAAAAAAACTTCTGCCTTTTCTGAAATCGGTTGCTGATAGAAAAGCACTTAAAAGCATCCTTGAAGCTTACTTGCCTCAGCTTGCTCTGCTTGTCTTTCTGGCTTTCCTGCCCACAATTCTCATGATTCTCTCCAAGGCTGAAGGGATTCCTTCAGAAGCCCATGTAGTGAGAGCTTCCTCTGGAAAGTATTTTTACTTTATCGTGTTCAACGTTTTCCTGGGAGTTACAATAGGTGGCACCTTGTTTGAGTCCCTCAAGGCGATTGAGAAACAACCTAACTCAATCGTTACACTGCTTGGCAATTCTCTTCCTCCCAATGCTACCTTCTTCATTAGTTTTGTTGCACTCAAGTTTTTTGTAGGCTATGGGCTTGAACTTTCTCGCTTGGTGTCGCTAGTGATATACCATATCAAGAGGAAATTTCTTTGTAAGACTGAAGCAGATGTGGAAGAGGCTTGGGCTCCTGGTGGTTTTAGCTATGGTACCAGAGTTCCAAATGACATGTTGATTATCACCATTGCTCTATGCTATTCTGTTATTGCTCCCATGATCCTTCCTTTTGCCATGGTGTACTTCATTGTGGGATGGTTTGTGCTTCGGAATCAGGCACTTAATGTGTATGTGGCCTCTTATGAAAGCAATGGGATTATGTGGCCTCATATGCACACCAGGATTCTGTCAGCTTTGTTCATCTCCCAGATTACAATGATTGGGTACTTCTCAATCAAGAAATTCTATTATTCACCCTTGCTCCTTCCACTTCCACTTGTAACTCTGGTATTTGGCTATGTTTGTAACAAAAGCTTTTACGTCTCATTTTGTATCACTTCCATGGAGGTGGCTTGCAATGATGTCAAGGAAGTTCCAAGCTTGTCTTCAGTTGTGGAGGCTTTTACCCCTCCCTGTGTATTTGTGGAGGACAAGTTTGATGATGTTGAGCAATTTGAGGATGCTCGGTCCACCATTTCCTCAAGGACGACCTCTATTAATACATCCATTGCTTGA___CCAACCATACCTAATTCTGTTTCTCCAATTCCTTATGTGCACGAAAACAAAGATGAGAGTCAAGAGACTATTGCTGCTTTTCCCATCGTTGTAAGAATAATATGTCATTTTATATTGATAGGACCATACAAGCTTTCCAAGATCCCCAAGACGAGCACAGCTCAAGCTCTCTGTTGTAACATAGTTTAGGATGTATGGGAGCCTAGAGAGTCATGATTGTCTGTTTATCTTCTATGTCCTCTGCTTCTTGTTCATTCTATTTATTTTGTATATCGCATATGAATATGATATACAATGGCTGCTAGCTATTTTGATTTGTTTAGTTTGGC

Fln Alignment:

CL2063Contig1___FTWLSKMQVNRVIYFPNKIVKGLDVSTKSRNPFA---------WIVEAWQATEDEIISIAGLDAAVYLIFITTALLIMVLSAGVCLPVLLPLSKTDDNYKLTLERAKNKTAASYDDFDRLAMGNVQKQSNRLWGFAVAAYWVSFVTYFLLWKTYNHVLRLRTREQASFESKPEQFVVLVRDIPPVPVGKTRKEQVDSFFRRLYPETFETSLIVTDISEAHKAWKKLEGYKKSLARAEVIFEKSKTVKNPEGMRPLHKTGSLGLLGPKVDSIDFYNEKIKDLSAKLETKQKITLI-EKQVAAAFIIFNSRPXXXXXSQVVHSQFADRWTVMAAPEPRQILWKNLAMPFYQRMIREKIVYIIVFLAIIFYMIPITFVSALTTLDNLKKLLPFLKSVADRKALKSILEAYLPQLALLVFLAFLPTILMILSKAEGIPSEAHVVRASSGKYFYFIVFNVFLGVTIGGTLFESLKAIEKQPNSIVTLLGNSLPPNATFFISFVALKFFVGYGLELSRLVSLVIYHIKRKFLCKTEADVEEAWAPGGFSYGTRVPNDMLIITIALCYSVIAPMILPFAMVYFIVGWFVLRNQALNVYVASYESNGIMWPHMHTRILSALFISQITMIGYFSIKKF-YYSXXXXXXXXVTLVFGYVCNKSFYVSF
B8LKM0_______________YSVLRKQPDNVYVYAPRRVA---EEQAKREGPFSLERLVPSPGWIVRAWRLSEDEFLSAAGFDAFVFLRIFIFSIRIFSIAGIIGVFVLLPLNYTGNQLR-TVDWADIPNQS----LDLFTIANVQDGSKRLWVHFCAVYLISGAACCLLYLEYKGIAEKRFSYFNSSPPQPNHFTILVRGIPKSDQ-HSMSETVEEFFTLYHPSTYFSHQMVYHSNRVQSLMHEAEKLYK-----RILHLKTK----PRLQRKSHREGFLGLFGAKVDPVDLYTKKLEDVEENVKLEQSTFYQNEKELPAAFVSFRSRYGAAMASQLVQSSNPLLWVTEPAPEPSDIYWPFLSAPYIQLWISKFVVVVAVFFLTILFLVPVTFVQGLTQLTELESFLPFLKKVLKLTIVSDIITGYLPSLILQMFQYFVPPIMLLFSAMRGHISNSGKMKSACIMVLSFTIWNVFFATVLSGSVISQINTFLSDPKDIPRQLAVVVPGQATFFITYVLTSGWTGLSLEIARIFPLIGNFFIRHFSNIT----EDADCAPSFPYHRDIPKVLLFGLLGFTYSLLAPLIMPFLLVYFFVGYIFYRNQMLKVYSPRFESAGQFWPIVHNCTIFSLVFMQIIAIGIFGVKKVPFASGWVIPMTVITLLFNDYCRKRFLPIF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain