SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42350

Length: 929 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene42350

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cell division cycle 20, cofactor of APC complex [Arabidopsis thaliana] emb\|CAB38785.1\| WD-repeat protein-like protein [Arabidopsis thaliana] emb\|CAB80044.1\| WD-repeat protein-like protein [Arabidopsis thaliana] gb\|ABG48494.1\| At4g33270 [Arabidopsis thalia	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Cell division cycle, putative	-	-	1.137e-09	-

Source	Gene names
Sma3	AT4g33260; AT4g33270; At4g11920; At4g22910; At4g33260; At4g33270; At4g33270/F17M5_30; At5g13840; At5g26900; At5g27570; At5g27945; CCS52; CCS52A1; CCS52A2; CCS52B; CDC20; CDC20.1; CDC20.2; CDC20.3; CDC20_1; CDH1; CDH1-CCS52; CHLREDRAFT_130713; CHLREDRAFT_3

Source	GOs	Term	Type	Identity
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	trichome branching	GO:0010091	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	positive regulation of DNA endoreduplication	GO:0032877	Biological Process	-
Sma3	DNA endoreduplication	GO:0042023	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33260.1	CDC20.2 Transducin family protein / WD-40 repeat family protein chr4:16041233-16043180 REVERSE LENGTH=447	74%
RefSeq	Arabidopsis thaliana	NP_195052.1	cell division cycle 20, cofactor of APC complex [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002319120.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX8

Fln msg: your sequence is shorter than subject: 270 - 508

Fln protein: SWALDGTQIAVGLNNSVVQLWDSQSNKRLRALKGHHERVGALAWNGPILTTGGLDGIIINHDVRIRDHIVQTYKGHTQEVCGLKWSPSGQQLASGGNDNLLYIWDKSMASHNPSSQYFHQLDEHCAAVKALAWCPFQNNLLASGGGTSDGSIKFWNTQTGACLNTVDTHSQVCSLLWNRHERELLSSHGPNQNQLTLWKYPSMVKITELTGHTARVLHMAQSPDGYTVASAAADEKLRFWQVFGAPDASKKTKTKDAKGAFNMFHTHIR*

Protein Length: 271

Fln nts: AGTTGGGCACTCGATGGGACGCAAATCGCCGTTGGGTTGAATAATTCTGTTGTACAGTTATGGGACTCGCAATCTAATAAAAGGCTAAGAGCCTTGAAAGGTCATCATGAACGTGTTGGTGCACTTGCTTGGAATGGTCCTATTCTCACCACAGGAGGGCTGGATGGGATTATAATCAATCATGATGTTCGCATCCGTGACCACATTGTTCAAACATACAAAGGACACACCCAGGAGGTTTGTGGATTGAAATGGTCTCCTTCTGGCCAACAACTTGCAAGTGGGGGAAATGACAATCTACTCTACATTTGGGACAAGAGCATGGCATCCCATAATCCTTCCTCTCAATACTTCCACCAATTAGATGAACATTGTGCAGCAGTCAAGGCCTTGGCATGGTGCCCCTTCCAGAACAATCTTTTGGCATCTGGTGGAGGGACTTCAGACGGTTCTATAAAGTTTTGGAACACTCAAACAGGTGCCTGCCTGAATACCGTCGACACCCATTCCCAAGTCTGTTCATTGCTGTGGAATAGACATGAACGTGAGTTATTGAGTTCGCATGGGCCAAATCAGAACCAGTTAACCTTATGGAAATACCCATCCATGGTGAAAATTACTGAACTTACAGGGCATACTGCTAGAGTTCTTCATATGGCACAGAGTCCTGATGGGTACACAGTGGCATCAGCTGCAGCAGATGAAAAACTCAGGTTTTGGCAAGTTTTTGGGGCTCCCGATGCCTCAAAGAAGACTAAGACTAAAGATGCAAAAGGGGCTTTCAACATGTTTCATACTCACATCCGCTAA___GTAGTATCTGTCCAAATTCATGGATCAGGATGGATGTTCAACTGAAGCTTTGTGAGACAATGACCCATGTCTTCAACTGCATGATAAGCTTTAAAGTGATTTTGACAAGCCTTTGGAGC

Fln Alignment:

CL1335Contig1___WALDGTQIAVGLNNSVVQLWDSQSNKRLRALKGHHERVGALAWNXXXXXXXXXXXXXXNHDVRIRDHIVQTYKGHTQEVCGLKWSPSGQQLASGGNDNLLYIWDKSMASHNPSSQYFHQLDEHCAAVKALAWCPFQNNLLASGGGTSDGSIKFWNTQTGACLNTVDTHSQVCSLLWNRHERELLSSHGPNQNQLTLWKYPSMVKITELTGHTARVLHMAQSPDGYTVASAAADEKLRFWQVFGAP
B8LPX8_______________WTPQGTHLAVGTNIGEIQIWDASRCKKVRTMGGHCTRAGALAWSSYILSSGSRDRNILHRDIRVQDDFVRKLVGHKSEVCGLKWSYDDRELASGGNDNQLLVWNQQ------SSQPLLRFNEHTAAVKAIAWSPHQHGILASGGGTADRCLRFWNTATDTRLNCVDTGSQVCNLVWCKNVNELVSTHGYSQNQIMVWRYPSMSKLATLTGHTLRVLYLAISPDGQTIVTGAGDETLRFWNIFPSP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain