SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42224

Length: 2781 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene42224
ATCCTAAGAGTCCTTGATATGGGCAAAGACTTTACGGTATGTACTGATGCATCCAAGCAAGGGCTGGGTGCAGTGTTGATGCAGGATAGGGGAGTGATAGCATATGCTTCCAGAAAGTTAAAACCTCATGAAGAGCTTTATGCTACTCACAATTTAGAATTAGCTGTTGTAGTGCTAGCTTTAAAGATTTGGAGACACTATCTAGTGGGACGAAGTTTTACACTTAAAAGCGACCATCAAAGTCTACAATATTTGTTCACCCAAAGAGACTTAAATGCCAGGCAAAGGCGATGGAGTGAATTCCTAAGTGAATATGACTTCGGGATATCATACATTAAGGGAAAAGAAAATGTAGTAGCCGATGCATTAAGCAGGAGACCTCGGGTATTTTCTCTCATACCCATTAAAGTGGACTTAAGACAACGAGTACTAGATCATCTTATAAAAGACAGCTGGTATTTAAAAGTGAGAGCCAGTCTTGAGGGTAAAAGGGCAAAAGAACCTAAATTTGAGGGTTATGAATTAGAAAACGATGGGATCCTACGATTCCATGGAAGGATGTACATTCCTGATGATAAAGATCTTCGAGATACTATCCTTGGGGAAGCTCACAAAGCAGTATATTGTGCTCATCCTGGAGTAGGGAAAATGTATGCGGATACCAAGAAACTCTTCTTTTGGGCAGGCATGAAGCGTGATATCACTCAATTTGTTGCAAAATGTATGGAATGTCAGCAAGTAAAGGCAGATCATTGTCACCCAGCAGGCCTCTTACAACCCCACGACATTCCTATGTCTAAATGGGAGACCATTTCTATGGATTTTATCACTGGACTACCTCTTACTTCTCAAAGACACAATGCCATTCTGGTAGTGGTGGATAAATTAACAAAAAGCGCCCATTTCATTCCGGTAAGAGATACTTATGATGTTGCTGATGTAGCTAGAGTATTCATAAGTGAAATCATCCGATTTCACGGAGTACCTAAGAAGATTATATCCGATAGAGATTCGCGATTCACTTCCAGATTCTGGACGTGCATGCAGACAGCCTTAGGTACTCAGCTAAATTTAAGCACTGCTTACCATCCTGAGACTGACGGGCAAACTGAAAGAGTAAATCAAGTACTTGAAGACATGTTGCGAATGTATGTAATGGATCAGCAATCACACTGGGAAAAGTATTTACCCTTGGTTGAATTCGCATACAACAACAGTTACCACAGTTCGATTGGGATGCCTCCATTTGAAGCTTTATATGGCAGACCTTGCAGAACACCGTTAAGTTGGGACAGGTTAGAAGATCGAGTGATTATAGGACCAGAATTAATCCATGAAATGGAAGCTCAGGTCAGGCAGATTAGACAACGATTAAAGGAAGCACAGGATAGACAAAAGAGTTATGCTGATGCTCACCGAACTGATAGGAAGTATGAAGTGGGGGATCAGGTCTTCATCCGCATCAAACCAAATAAAAGTACTATTCGATTCGGAAAAGGGACAAAGTTGTCACCCCGATTTATAGGACCGTTTAAAGTCGTGGAAAGAGTTGGACCTGTTGCCTATCGTCTTGCCCTGCCACCTCACCTGCATAGAATTCATAATGTATTTCATGTTTCTGTATTAAGACATTATATAGCTGATCTATCTCATAACATCCAGTGGAGAGAATTGCAGGTATCGGACGAGGGAGTCGTAACGGTCGAACCGTTACGTATACTGGGACGTAGGGTTCGACAGTTGAGGAACCGCCTGGTGGACCAAGTTAAGGTCCAATGGGACAAGTATAGTCCTGGATCAGCAACTTGGGAAAATACAGAGGACATATGTCAAAGATACCCTAATCTATGTCGATTTTGAAGAACTTTAAACTATGCATAGTATATATTTACTTCACTACAATCAGAGACTCAGAAACTTTTTTTGAATGATTATGGATAAACGTGAAATTTTGCGGCATAACACATGTTTAATTCCTGCTGGTACATGGATACCAAAACTATATATATGGTTCATTTTACTAAATTATAGTTGTCGAAGGAAAGTTAAGGCAGTTAAGGGTTTTTACTTCTAAATAGAAATTAAGATATTGTAAATCTGTTTTGTTTTTACATGTCAATATGATCAATGGCATGGAAATCAGGAAGTGAATACATTTTAGATGGAAGTCAAAAGACATGCATAGAAAATGGTAAAAATATGTTATACTGTAGTATCATATGTGAATAATACATGAGTTATTTTGAATATGCTGATGCACATTTTACGAATGCATGAGTGAGTGTATGATTGCAGATTCAAGTATCCAATTACCGGGATGACCACGTGATGACAGAACCTCAGAACAATTAAAGCTCCAAGTGATTCTATGATAGGGTGATTCTACTGGGAGGGGTGGAATCAGGGTTAACCGTTTATCCTCCGAACCCTGGAGTCATGGGAGGACTGTGCGAGTCACGCTCCCCTAGACGTGTGATGATGACTGCCGGATGCCTACTGGGGATCAGATCGGTATAACCGACGCTGTCACCCTAGAGTTTATGAATGGAGAGGTCAGTAAAACTGACGCCATGGCATACTCTGGTAGAGGACGGATAGGATGGGAGCAGAAGAGATTAGGGAGGATAGGATGATTTCAGAATAGTTTGGGAACCTGGATAGGGAAAGGCATAACTTCGGGACGAAGTTTTCTGAAGGGGGAGTGTATGTAACGACCCATCTTTAATTGCATATATTATGTGCCCCCGTACTCTGCGTTGATACCACTGCTTAAGCAGTGGT

Ace file of the UniGene sp_v3.0_unigene42224 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Sma3	Retrotransposon protein, putative, Ty3-gypsy subclass	-	-	-

Source	Gene names
Sma3	At2g10780; B1234D02.1; H0306F03.2; H0502G05.10; H0502G05.12; H0613A10.2; H0616A11.2; H0616A11.5; H0624F09.1; H0807C06-H0308C08.3; H0807C06-H0308C08.9; H0818H01.18; LOC_Os03g04860; LOC_Os03g15160; LOC_Os03g23220; LOC_Os03g23800; LOC_Os03g23830; LOC_Os03g23

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase A2A, retrovirus, catalytic	IPR001995	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABB2

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 614 - 76

Fln protein: MGKDFTVCTDASKQGLGAVLMQDRGVIAYASRKLKPHEELYATHNLELAVVVLALKIWRHYLVGRSFTLKSDHQSLQYLFTQRDLNARQRRWSEFLSEYDFGISYIKGKENVVADALSRRPRVFSLIPIKVDLRQRVLDHLIKDSWYLKVRASLEGKRAKEPKFEGYELENDGILRFHGRMYIPDDKDLRDTILGEAHKAVYCAHPGVGKMYADTKKLFFWAGMKRDITQFVAKCMECQQVKADHCHPAGLLQPHDIPMSKWETISMDFITGLPLTSQRHNAILVVVDKLTKSAHFIPVRDTYDVADVARVFISEIIRFHGVPKKIISDRDSRFTSRFWTCMQTALGTQLNLSTAYHPETDGQTERVNQVLEDMLRMYVMDQQSHWEKYLPLVEFAYNNSYHSSIGMPPFEALYGRPCRTPLSWDRLEDRVIIGPELIHEMEAQVRQIRQRLKEAQDRQKSYADAHRTDRKYEVGDQVFIRIKPNKSTIRFGKGTKLSPRFIGPFKVVERVGPVAYRLALPPHLHRIHNVFHVSVLRHYIADLSHNIQWRELQVSDEGVVTVEPLRILGRRVRQLRNRLVDQVKVQWDKYSPGSATWENTEDICQRYPNLCRF*

Protein Length: 615

Fln nts: ATCCTAAGAGTCCTTGAT_-_ATGGGCAAAGACTTTACGGTATGTACTGATGCATCCAAGCAAGGGCTGGGTGCAGTGTTGATGCAGGATAGGGGAGTGATAGCATATGCTTCCAGAAAGTTAAAACCTCATGAAGAGCTTTATGCTACTCACAATTTAGAATTAGCTGTTGTAGTGCTAGCTTTAAAGATTTGGAGACACTATCTAGTGGGACGAAGTTTTACACTTAAAAGCGACCATCAAAGTCTACAATATTTGTTCACCCAAAGAGACTTAAATGCCAGGCAAAGGCGATGGAGTGAATTCCTAAGTGAATATGACTTCGGGATATCATACATTAAGGGAAAAGAAAATGTAGTAGCCGATGCATTAAGCAGGAGACCTCGGGTATTTTCTCTCATACCCATTAAAGTGGACTTAAGACAACGAGTACTAGATCATCTTATAAAAGACAGCTGGTATTTAAAAGTGAGAGCCAGTCTTGAGGGTAAAAGGGCAAAAGAACCTAAATTTGAGGGTTATGAATTAGAAAACGATGGGATCCTACGATTCCATGGAAGGATGTACATTCCTGATGATAAAGATCTTCGAGATACTATCCTTGGGGAAGCTCACAAAGCAGTATATTGTGCTCATCCTGGAGTAGGGAAAATGTATGCGGATACCAAGAAACTCTTCTTTTGGGCAGGCATGAAGCGTGATATCACTCAATTTGTTGCAAAATGTATGGAATGTCAGCAAGTAAAGGCAGATCATTGTCACCCAGCAGGCCTCTTACAACCCCACGACATTCCTATGTCTAAATGGGAGACCATTTCTATGGATTTTATCACTGGACTACCTCTTACTTCTCAAAGACACAATGCCATTCTGGTAGTGGTGGATAAATTAACAAAAAGCGCCCATTTCATTCCGGTAAGAGATACTTATGATGTTGCTGATGTAGCTAGAGTATTCATAAGTGAAATCATCCGATTTCACGGAGTACCTAAGAAGATTATATCCGATAGAGATTCGCGATTCACTTCCAGATTCTGGACGTGCATGCAGACAGCCTTAGGTACTCAGCTAAATTTAAGCACTGCTTACCATCCTGAGACTGACGGGCAAACTGAAAGAGTAAATCAAGTACTTGAAGACATGTTGCGAATGTATGTAATGGATCAGCAATCACACTGGGAAAAGTATTTACCCTTGGTTGAATTCGCATACAACAACAGTTACCACAGTTCGATTGGGATGCCTCCATTTGAAGCTTTATATGGCAGACCTTGCAGAACACCGTTAAGTTGGGACAGGTTAGAAGATCGAGTGATTATAGGACCAGAATTAATCCATGAAATGGAAGCTCAGGTCAGGCAGATTAGACAACGATTAAAGGAAGCACAGGATAGACAAAAGAGTTATGCTGATGCTCACCGAACTGATAGGAAGTATGAAGTGGGGGATCAGGTCTTCATCCGCATCAAACCAAATAAAAGTACTATTCGATTCGGAAAAGGGACAAAGTTGTCACCCCGATTTATAGGACCGTTTAAAGTCGTGGAAAGAGTTGGACCTGTTGCCTATCGTCTTGCCCTGCCACCTCACCTGCATAGAATTCATAATGTATTTCATGTTTCTGTATTAAGACATTATATAGCTGATCTATCTCATAACATCCAGTGGAGAGAATTGCAGGTATCGGACGAGGGAGTCGTAACGGTCGAACCGTTACGTATACTGGGACGTAGGGTTCGACAGTTGAGGAACCGCCTGGTGGACCAAGTTAAGGTCCAATGGGACAAGTATAGTCCTGGATCAGCAACTTGGGAAAATACAGAGGACATATGTCAAAGATACCCTAATCTATGTCGATTTTGAAGAACTTTAAACTATGCATAGTATATATTTACTTCACTACAATCAGAGACTCAGAAACTTTTTTTGAATGATTATGGATAAACGTGAAATTTTGCGGCATAACACATGTTTAATTCCTGCTGGTACATGGATACCAAAACTATATATATGGTTCATTTTACTAAATTATAGTTGTCGAAGGAAAGTTAAGGCAGTTAAGGGTTTTTACTTCTAAATAGAAATTAAGATATTGTAAATCTGTTTTGTTTTTACATGTCAATATGATCAATGGCATGGAAATCAGGAAGTGAATACATTTTAGATGGAAGTCAAAAGACATGCATAGAAAATGGTAAAAATATGTTATACTGTAGTATCATATGTGAATAATACATGAGTTATTTTGAATATGCTGATGCACATTTTACGAATGCATGAGTGAGTGTATGATTGCAGATTCAAGTATCCAATTACCGGGATGACCACGTGATGACAGAACCTCAGAACAATTAAAGCTCCAAGTGATTCTATGATAGGGTGATTCTACTGGGAGGGGTGGAATCAGGGTTAACCGTTTATCCTCCGAACCCTGGAGTCATGGGAGGACTGTGCGAGTCACGCTCCCCTAGACGTGTGATGATGACTGCCGGATGCCTACTGGGGATCAGATCGGTATAACCGACGCTGTCACCCTAGAGTTTATGAATGGAGAGGTCAGTAAAACTGACGCCATGGCATACTCTGGTAGAGGACGGATAGGATGGGAGCAGAAGAGATTAGGGAGGATAGGATGATTTCAGAATAGTTTGGGAACCTGGATAGGGAAAGGCATAACTTCGGGACGAAGTTTTCTGAAGGGGGAGTGTATGTAACGACCCATCTTTAATTGCATATATTATGTGCCCCCGTACTCTGCGTTGATACCACTGCTTAAGCAGTGGT

Fln Alignment:

CL4Contig1___KKLFFWAGMKRDITQFVAKCMECQQVKADHCHPAGLLQPHDIPMSKWETISMDFITGLPLTSQRHNAILVVVD
D5ABB2_______________QKYFYWSKLRHDVSKYIRSCSACSIAKPA-IKKQGLYTPLPTLDRPWESISMDYMSGLPSTKHGNDYVFVVVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain