SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42182

Length: 268 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene42182
TAAAATGCTATGGGTGGGCATGAAACCAGACAGCATTACATTTCTTGGTGTTCTTATGGCATGCACTCATGCAGGCCTAGTGGATGAAGGCCGACACTACTTCATTTCTATGAGTCAAGACCATTACATCACTCCTAAAGTGAGCCATTATGCATGCATGGTTGACCTTCTTGGGCGAGCAGGGTGCCTGGAAGAAGCAGAGGAGATGATCAACAAAATGCCAGTGGAGCCCGATGCTTGTGTGTGGGGGGCATTGCTTGGCTCCTGC

Ace file of the UniGene sp_v3.0_unigene42182 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SIT7.1\|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb\|AAD22682.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC06244.1\| pentatricopeptide repe	-	-	3.0e-26	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Pentatricopeptide repeat-containing protein, putative	-	-	3.539e-14	-

Source	Gene names
Sma3	At1g08070; At1g20230; At2g01510; At2g13600; At2g22070; At3g15930; At3g29230; At4g02750; At5g08510; At5g19020; At5g40410; B1032F05.19; B1358B12.23; F2I9.13; F8L15.21; GSVIVT00000138001; GSVIVT00000282001; GSVIVT00000293001; GSVIVT00000621001; GSVIVT0000206

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-
Sma3	methylation	GO:0032259	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Putative methylase	IPR004557	-	-
Sma3	Methyltransferase small	IPR007848	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G13600.1	Pentatricopeptide repeat (PPR) superfamily protein chr2:5671493-5673586 FORWARD LENGTH=697	1.0e-32	60%
RefSeq	Arabidopsis thaliana	NP_178983.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-32	60%
RefSeq	Populus trichocarpa	XP_002310520.1	predicted protein [Populus trichocarpa]	1.0e-33	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 193 aas, your sequence is shorter than subject: 89 - 370

Fln protein: KMLWVGMKPDSITFLGVLMACTHAGLVDEGRHYFISMSQDHYITPKVSHYACMVDLLGRAGCLEEAEEMINKMPVEPDACVWGALLGSC

Protein Length: 90

Fln nts: TAAAATGCTATGGGTGGGCATGAAACCAGACAGCATTACATTTCTTGGTGTTCTTATGGCATGCACTCATGCAGGCCTAGTGGATGAAGGCCGACACTACTTCATTTCTATGAGTCAAGACCATTACATCACTCCTAAAGTGAGCCATTATGCATGCATGGTTGACCTTCTTGGGCGAGCAGGGTGCCTGGAAGAAGCAGAGGAGATGATCAACAAAATGCCAGTGGAGCCCGATGCTTGTGTGTGGGGGGCATTGCTTGGCTCCTGC

Fln Alignment:

CL22268Contig1___KMLWVGMKPDSITFLGVLMACTHAGLVDEGRHYFISMSQDHYITPKVSHYACMVDLLGRAGCLEEAEEMINKMPVEPDACVWGALLGSC
A9P0W0_______________QMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGAC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain