SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42181

Length: 1783 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene42181 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dihydrodipicolinate synthase, putative n=1 Tax=Ricinus communis RepID=B9S6U4_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Dihydrodipicolinate synthase, DapA	IPR005263	-	-
Sma3	Dihydrodipicolinate synthetase-like	IPR002220	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G45440.1	DHDPS2 dihydrodipicolinate synthase chr2:18731294-18732867 FORWARD LENGTH=365	73%
RefSeq	Arabidopsis thaliana	NP_182068.1	dihydrodipicolinate synthase [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002301301.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ02

Fln msg:

Fln protein: MVSACIKLCKLFPIDIQVGQGKRESKRWRPARAATMQDVHLPMRSFELKNRTQVNEIKKLKLITAIKTPYLPDGRFDLEAYDSLLNMQIVNGVEGVIVGGTTGEGQLMTWDEHIMLIGHTVNCFGDAIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSHEGMVLHFRSVLSMGPTIIYNVPGRTGQDIPPLVIKKLAKSPNFAGVKECVGNDRINEYTDNGMAVWSGNDDQCHDARWNYGARGVISVTSNLVPGLMHDLMFDGKDEALNKMLLPLMDWLFCEPNPIALNTALAQLGVIRPIFRLPYAPLPIEKRIQFCNIVRDIGRKSFVGNRDVQVLEDDDFILLGRY*

Protein Length: 361

Fln nts: CGCTTCTGCCCTTTTTACTTTCAGGTAATCCAGACAAAAACGTGCCATAGAACGGTTCTAGAACGACGTTGATGGTGGATGAACAAAGCTGCAGTTTCTATAGAAGATACGGGTTCAGTCCACATCATTGAAGTGTAAAATATGAGGTTTGATACTACCGACCTTTCTTCGTATGTCTGCCTGGACGGAGATGCGTTAGGTGCTGTGCATCGTTTTAATGTACCGAGCATTAGATGGCAGTAGAAAATAGAAGAATTTTTGTAATTTTCTAGAGGAGTGTGCTTGACAGCTTGCTGAAGAAAACAGAGCTTGTTCCAACAATCATTTTCAGATAGCCAGTCTTATCCAGCC_-_ATGGTGTCTGCCTGTATAAAGCTGTGCAAGCTATTCCCTATCGACATACAAGTTGGTCAAGGAAAGAGGGAAAGCAAAAGATGGAGACCAGCAAGAGCAGCTACTATGCAAGATGTACATCTTCCTATGCGAAGCTTTGAATTGAAAAATAGAACTCAAGTCAATGAAATTAAAAAACTCAAGTTGATTACAGCAATTAAGACCCCATATTTACCAGACGGACGTTTTGATCTGGAAGCTTATGATTCTCTTTTAAATATGCAAATAGTCAATGGTGTCGAGGGTGTTATTGTTGGAGGAACAACTGGGGAAGGGCAGCTAATGACTTGGGATGAACATATTATGCTAATTGGACACACTGTCAATTGTTTTGGTGATGCAATCAAAGTCATTGGAAATACCGGAAGCAATTCAACAAGAGAGGCAATACATGCAACAGAACAAGGCTTTGCTGTTGGAATGCATGCTGCTCTTCACATTAATCCTTACTATGGAAAGACATCACATGAAGGAATGGTGTTGCATTTCAGAAGTGTGCTTTCAATGGGTCCAACCATTATATATAATGTCCCTGGCCGGACTGGACAAGACATTCCTCCATTAGTAATAAAGAAACTTGCGAAGAGTCCAAATTTTGCAGGTGTTAAAGAATGCGTAGGAAATGACCGTATTAATGAGTACACAGATAATGGTATGGCTGTCTGGAGTGGAAATGATGATCAGTGTCATGATGCAAGGTGGAACTATGGAGCTAGAGGTGTCATCTCTGTTACAAGTAACTTGGTTCCTGGTTTGATGCACGATCTTATGTTCGATGGGAAGGATGAAGCTCTGAACAAAATGCTATTACCTTTGATGGACTGGCTATTTTGTGAGCCTAATCCGATTGCTCTTAATACAGCTTTGGCACAACTTGGTGTAATAAGGCCTATATTTAGGTTACCTTACGCCCCTCTTCCTATTGAGAAAAGGATCCAATTTTGCAATATTGTTCGAGATATTGGCCGCAAAAGTTTCGTTGGAAATAGAGATGTTCAAGTTCTAGAGGATGACGATTTCATTCTCTTGGGTCGGTATTAG___AGGTTGAGTTTTGAGTGAAGCAGACATGATATTTTCACAATATATTATTTTGCCTTGTGCAGTGCATATCATTTTTTACTTCGTTTGAGCTTGTGACCGAGGCATTATGTTTGAAGACTTCGTTTCTGTGCTTAGAGATTTACTTACAAGTTACAGTTACAGGATATATGGTCAACAATGATTATTGGACAAACCTATGTATGAGTTAATTTATACTGTTATCTGTCAAGGAAGTTGATACATGAAGAATTCACATGCATTTTCGCTGCATGGTTGCTAAATTATTGGTCATTTGCAAGTTGATGAATTTTCTCGTCTTTCCACGAGCAATTTGAAGCATGGATATCATTTA

Fln Alignment:

CL22258Contig1___MVSACIKLCKLFPIDIQVGQGKRESKRWRPARAATMQDVHLPMRSFELKNRTQVNEXXXXXXXXXXXTPYLPDGRFDLEAYDSLLNMQXXXXXXXXXXXXXXXXGQLMTWDEHIMLIGHTVNCFGDAIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSHEGMVLHFRSVLSMGPTIIYNVPGRTGQDIPPLVIKKLAKSPNFAGVKECVGNDRINEYTDNGMAVWSGNDDQCHDARWNYGARGVISVTSNLVPGLMHDLMFDGKDEALNKMLLPLMDWLFCEPNPIALNTALAQLGVIRPIFRLPYAPLPIEKRIQFCNIVRDIGRKSFVGNRDVQVLEDDDFILLGRY
B8LQ02_______________MVSTCIKLCTLFPIDVQVGQGKSESKRWRPARAATMQDVHLPMRSFELKNRTQVDEIKKLRLITAIKTPYLPDGRFDLEAYDSLVNIQIVNGVEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGDAIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSHEGLMLHFRSVLSMGPTIIYNVPGRTGQDIPPSVIKKLAESPNFAGVKECVGNDRVNEYTDNGMVVWSGNDDQCHDARWNYGARGVISVTSNLVPGLMHNLIFDGKDEALNKMLLPLMDWLFCEPNPIALNTALAQLGVIRPIFRLPYAHLPTEKRMQFCNIVRNIGRKNFIGNSDVQVLDDEDFILLGRY

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain