SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41963

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene41963
CGGGGTGGACGAATTGACTTTTCAATGAATCGACGACAAGAGCTTTGCAGGAATTTTCAGCGGGGCAGTTGCCAATATGGTGCACGATGCAAGTTTCTTCACCAAACTCAACAACAGCAACAACCAAACCCTTATGGCTTTGGTGTGCAAAATCCATCTCAGGGAAGGAGTGGATTCAATTTTGGTGCAAACAATCAGAATAAACAGAAGGCAACTGATAACAAGGAAGGAGGGAATCGTTTTCTAGC

Ace file of the UniGene sp_v3.0_unigene41963

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleic acid binding protein n=2 Tax=Zea mays RepID=B6SW16_MAIZE	-	-	1.0e-10	45%
FL-Next	sp=Zinc finger CCCH domain-containing protein 46; Oryza sativa subsp. japonica (Rice).	-	-	0.0	48%

Source	Gene names
Sma3	GSVIVT00033786001;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G75340.1	Zinc finger C-x8-C-x5-C-x3-H type family protein chr1:28269153-28271873 REVERSE LENGTH=435	2.0e-11	62%
RefSeq	Arabidopsis thaliana	NP_565108.2	zinc finger CCCH domain-containing protein 16 [Arabidopsis thaliana]	2.0e-11	62%
RefSeq	Populus trichocarpa	XP_002308140.1	predicted protein [Populus trichocarpa]	6.0e-14	47%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q5Z807

Fln msg: Distance to subject end: 309 aas, your sequence is shorter than subject: 74 - 390

Fln protein: MNRRQELCRNFQRGSCQYGARCKFLHQTQQQQQPNPYGFGVQNPSQGRSGFNFGANNQNKQKATDNKEGGNRFL

Protein Length: 75

Fln nts: CGGGGTGGACGAATTGACTTTTCA_-_ATGAATCGACGACAAGAGCTTTGCAGGAATTTTCAGCGGGGCAGTTGCCAATATGGTGCACGATGCAAGTTTCTTCACCAAACTCAACAACAGCAACAACCAAACCCTTATGGCTTTGGTGTGCAAAATCCATCTCAGGGAAGGAGTGGATTCAATTTTGGTGCAAACAATCAGAATAAACAGAAGGCAACTGATAACAAGGAAGGAGGGAATCGTTTTCTAGC

Fln Alignment:

CL19462Contig1___MNRRQELCRNFQRGSCQYGARCKFLH------XXXXXXXPNPYGFGVQNPSQGRSGFNFGANNQNKQKATDNKEG
Q5Z807_______________MSRRQEICRNFQRGSCKYGAQCRYLHASPHQQQQQQQAKPNPFGFGTGSRQQQQPSFGSQFQQQQQQQQKPNPFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain