SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41907

Length: 205 nt

UniGene Fasta

>sp_v3.0_unigene41907
AGACCTCTGGATGATAAATCGAAAAAGCCAATTGCCCTTATGGAAGATGGGAAGGGCGGAGTGTTTGTGAGAGGCCTTGAAGAAGAAATTGTATGCAGTGCCACTGACATTTACACTCTTTTAGAAAGAGGATCCTCGAAGAGACGAACTGCAGAAACTCTGCTAAATAAGCAGAGCAGCCGCTCACATTCGATATTGTCTATCA

Ace file of the UniGene sp_v3.0_unigene41907

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bipolar kinesin KRP-130, putative n=1 Tax=Ricinus communis RepID=B9T3J4_RICCO	-	-	6.0e-25	86%
FL-Next	sp=Probable 125 kDa kinesin-related protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	80%
Sma3	Bipolar kinesin KRP-130, putative	-	-	5.4e-12	-

Source	Gene names
Sma3	At2g28620; At2g36200; At2g37420; At3g45850; CHLREDRAFT_137882; F16L2_60; F2H17.19; GSVIVT00021588001; GSVIVT00023124001; GSVIVT00024429001; KIN4; KIN8; MICPUCDRAFT_4389; MICPUN_85360; MtrDRAFT_AC149490g13v2; MtrDRAFT_AC150442g20v2; OsI_11022; OsI_18221; O

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G28620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr2:12265167-12270020 REVERSE LENGTH=1042	3.0e-29	83%
RefSeq	Arabidopsis thaliana	NP_180430.2	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]	4.0e-29	83%
RefSeq	Populus trichocarpa	XP_002299897.1	predicted protein [Populus trichocarpa]	5.0e-31	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P82266

Fln msg: Distance to subject end: 768 aas, your sequence is shorter than subject: 68 - 1009

Fln protein: RPLDDKSKKPIALMEDGKGGVFVRGLEEEIVCSATDIYTLLERGSSKRRTAETLLNKQSSRSHSILSI

Protein Length: 69

Fln nts: AGACCTCTGGATGATAAATCGAAAAAGCCAATTGCCCTTATGGAAGATGGGAAGGGCGGAGTGTTTGTGAGAGGCCTTGAAGAAGAAATTGTATGCAGTGCCACTGACATTTACACTCTTTTAGAAAGAGGATCCTCGAAGAGACGAACTGCAGAAACTCTGCTAAATAAGCAGAGCAGCCGCTCACATTCGATATTGTCTATCA

Fln Alignment:

CL18577Contig1___DDKSKKPIALMEDGKGGVFVRGLEEEIVCSATDIYTLLERGSSKRRTAETLLNKQSSRSHSILSI
P82266_______________EEKQKKPLPLMEDGKGGVLVRGLEEEIVTSANEIFTLLERGSSKRRTAETFLNKQSSRSHSLFSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain