SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41896

Length: 305 nt

UniGene Fasta

>sp_v3.0_unigene41896
TCAGGCCTATCTCACTATGCAATGCTATATACAAGATTATAGCAAAAGTCATAGCGGTACGTCTAAAGCCTATTCTATCAGAGAGTATATCCAATGAGCAATTTGGTTTTTTGGATGGTCGTCAAATACATGAAGCCATTGAGGTGGCACAGGAAACCATTCACAGTATTAGACTAGCAAAGAGGAAAGGAGCAGTACTCAAATTAGATCTGTCAAAAGCCTACGACAGGATAAGCTGGTCATACCTCAGGCTGCTAATGACTCATCTAGGCTTTAAGGTGGAGTTCATAAATTGGATAATGGGA

Ace file of the UniGene sp_v3.0_unigene41896

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Pinus elliottii RepID=O65863_PINEL	-	-	3.0e-17	45%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	54%

Source	Gene names
Sma3	F12K8.9; LOC_Os12g21910; LOC_Os12g29700; OsI_30282; OsI_31997; OsI_37193; OsJ_28290; OsJ_29974; OsJ_31232; OsJ_33393; reverse transcriptase;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GA06

Fln msg: Distance to subject end: 360 aas, your sequence is shorter than subject: 101 - 662

Fln protein: RPISLCNAIYKIIAKVIAVRLKPILSESISNEQFGFLDGRQIHEAIEVAQETIHSIRLAKRKGAVLKLDLSKAYDRISWSYLRLLMTHLGFKVEFINWIMG

Protein Length: 102

Fln nts: TCAGGCCTATCTCACTATGCAATGCTATATACAAGATTATAGCAAAAGTCATAGCGGTACGTCTAAAGCCTATTCTATCAGAGAGTATATCCAATGAGCAATTTGGTTTTTTGGATGGTCGTCAAATACATGAAGCCATTGAGGTGGCACAGGAAACCATTCACAGTATTAGACTAGCAAAGAGGAAAGGAGCAGTACTCAAATTAGATCTGTCAAAAGCCTACGACAGGATAAGCTGGTCATACCTCAGGCTGCTAATGACTCATCTAGGCTTTAAGGTGGAGTTCATAAATTGGATAATGGGA

Fln Alignment:

CL18425Contig1___RPISLCNXXXXXXXXXXXXRLKPILSESISNEQFGFLDGRQIHEAIEVAQETIHSIRLAKRKG---AVLKLDLSKAYDRISWSYLRLLMTHLGFKVEFINWIM
B9GA06_______________RPISLCNVLYKIVSKVLANRLKTILPEVISPTQSAFVPGRLISDNILVAYEMTHYMRSKKRGKMGYAAIKLDMSKAYDRVEWSFLRDMMLWLGFNAEWINLVM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain