SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41890

Length: 1283 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene41890 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Putative potassium transporter 12; AltName: Full=OsHAK12 emb\|CAD21002.1\| putative potasium transporter [Oryza sativa Japonica Group] gb\|EAZ41864.1\| hypothetical protein OsJ_26409 [Oryza sativa Japonica Group]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Potassium transporter, putative	-	-	2.34017e-43	-

Source	Gene names
Sma3	6J23.11; At1g31120; At1g60160; At1g70300; At2g30070; At2g35060; At2g40540; At3g02050; At4g13420; At4g19960; At4g23640; At4g33530; At5g09400; At5g14880; B1026C12.31-1; B1026C12.31-2; CHLREDRAFT_121784; CHLREDRAFT_121823; CHLREDRAFT_123407; F17M5.1; F17O7.1

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	potassium:sodium symporter activity	GO:0009674	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, NF-X1-type	IPR000967	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G31120.1	KUP10 K+ uptake permease 10 chr1:11104375-11107361 REVERSE LENGTH=796	65%
RefSeq	Arabidopsis thaliana	NP_181051.1	Potassium transporter 11 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002303503.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P149

Fln msg: STOP codon was not found. Distance to subject end: 157 aas, your sequence is longer than subject: 383 - 225

Fln protein: MVSSSSSMEDKIHEDREMSGRGRMWSLDQKIDEPIQDADAEHVTAMDTREGFSALMVLRLAFQSFGVVYGDLGTSPLYVFSSTFPDGINDSDEVMGALSLIIYTLTLIPLLKYVFVVLRANDNGEGGTFALYSLLCRHAKVNTIPNQHHTDEKLTTYSRRKIKDRSCAARTKKWLEANVYGQNALLLLVLVGTCMFIGDGIFTPAISVLSSVHGIKVQHHGMSSAVVVAIAVVILIILFSMQHYGTDKVGWLFAPVVFFWFICIGSIGAYNICKHDSHVLKAFSPVYIVRYFRRGKKHSWASLGGIMLSVTGTEALFADLGHFSTLPLQIAFTSVVFPCLLLQYLGQAAYLIHHQDDVTEAFYRSIPDLAYYPVFVIATMAAV

Protein Length: 384

Fln nts: GATGCTTATTTGATGAAATTGTATGACGATGCCCCAAGTTCAAGTTCGATTCCCGCGAGCCTCACCCCTTTTATGTTGACATAGAAAAACAGCAGCAGAAGAGAATTGGGAGTAAGAGAATTAAAAGGATATC_-_ATGGTATCCTCATCATCGTCCATGGAGGATAAGATTCACGAAGACCGAGAAATGAGCGGCAGAGGGCGCATGTGGTCTCTGGATCAGAAAATAGACGAGCCCATTCAAGATGCAGACGCCGAGCATGTGACAGCCATGGACACAAGAGAGGGGTTTTCAGCTTTAATGGTTCTGCGTCTTGCATTTCAGAGTTTTGGAGTTGTTTATGGAGACTTGGGAACATCTCCATTATATGTTTTTAGCAGCACATTTCCGGATGGTATCAATGATTCCGACGAAGTGATGGGAGCTCTTTCATTAATTATATATACTTTAACGCTGATTCCTCTTCTGAAATATGTCTTTGTGGTCCTGAGGGCCAATGACAACGGAGAAGGTGGAACATTTGCTCTATATTCGTTACTCTGTAGACATGCTAAAGTGAACACTATTCCAAATCAACACCACACAGATGAAAAACTCACAACCTATAGCAGACGAAAAATTAAAGATAGATCATGTGCTGCGAGAACAAAGAAATGGCTAGAAGCAAATGTCTACGGTCAAAATGCACTGCTTCTTCTTGTACTTGTTGGCACTTGCATGTTCATTGGCGACGGAATTTTTACTCCTGCTATCTCAGTCCTTTCCTCTGTTCATGGTATCAAGGTACAGCATCATGGAATGAGCTCTGCTGTAGTTGTGGCGATTGCAGTGGTCATCTTGATTATTCTATTTAGCATGCAGCATTATGGTACAGACAAAGTTGGATGGTTATTTGCACCGGTAGTTTTCTTTTGGTTCATATGCATTGGAAGTATTGGAGCTTACAATATATGTAAGCATGATTCACATGTCTTGAAAGCTTTCTCTCCAGTTTATATAGTGCGGTATTTTAGAAGAGGGAAAAAACATAGCTGGGCTTCTCTAGGAGGCATTATGCTTAGTGTAACAGGTACAGAAGCGCTCTTTGCTGATTTGGGCCATTTTTCGACCTTACCTCTTCAAATCGCATTCACATCAGTTGTGTTTCCTTGCCTGCTATTGCAATATTTGGGGCAGGCTGCATATCTTATACACCATCAAGACGATGTCACAGAAGCCTTTTATAGGTCTATTCCAGATCTAGCTTATTATCCTGTGTTTGTCATTGCAACTATGGCTGCTGTTG

Fln Alignment:

CL18360Contig1___SGRGRMWSLDQKIDEPIQDADAEHVTAMDTREGFSALMVLRLAFQSFGVVYGDLGTSPLYVFSSTFPDGINDSDEVMGAXXXXXXXXXXXXXLKYVFVVLRANDNGEGGTFALYSLLCRHAKVNTIPNQHHTDEKLTTYSRRKIKDRSCAARTKKWLEANVYGQNALLLLVLVGTCMFIGDGIFTPAISVLSSVHGI
A9P149_______________SGRGRIWSLDQKIDQPIKDAEAGHVTAMDARKELSALMILRLAFHSFGVVYGDLGTSPLYVFSSTFPDGIQDSEDVMGALSLIIYTLTLIPLLKYVFVVMRANDNGEGGTFALYSLLCRHAKVNTIPNQDRTDEELTTYSRQTIKDKSFAARTKKWLEGKVYRKNALLLLVLIGTCMVIGDGIFTPAISGHASLSSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain