SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41743

Length: 313 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene41743
GCATGACCGAATAAGCACTCGGCCGTTTCTCAATACGATTGAAAAGAAGTGGCTGGCATTCCAGATGCTATATGCTTTGAAGCAGAGCCATGAGCATGGTGTTTGTCACGGTGATATAAAATGTGAAAATGTACTTGTGACCTCTTGGAGTTGGTTGTACCTTGCTGACTATGCATCTTTCAAGCCAACATATATACCTGATGATGATCCATCGGACTTCTCTTTTTTCTTTGACACTGGAGGAAGACGCCGTTGTTATCTTGCACCAGAGCGCTTTTATGAACCAGGAAGTGAGGCTCAGATTGCTGCAGAT

Ace file of the UniGene sp_v3.0_unigene41743 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to protein kinase family protein / WD-40 repeat family protein n=1 Tax=Vitis vinifera RepID=UPI0001984267	-	-	7.0e-40	75%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	0.0	83%

Source	Gene names
Sma3	At4g29380; GSVIVT00016649001; MICPUCDRAFT_50868; MICPUN_79281; OJ1004_E04.19; OSTLU_30739; OsI_09285; OsJ_08723; Ot03g04070; PHYPADRAFT_144257; PHYPADRAFT_234965; RCOM_1049310;

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	sperm motility	GO:0030317	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR015736	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3		IPR017442	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G29380.1	protein kinase family protein / WD-40 repeat family protein chr4:14458822-14464692 FORWARD LENGTH=1494	9.94922e-44	77%
RefSeq	Arabidopsis thaliana	NP_194667.1	phosphoinositide-3-kinase, regulatory subunit 4, p150 [Arabidopsis thaliana]	2.00386e-43	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B8AEH2

Fln msg: Distance to subject end: 1057 aas, your sequence is shorter than subject: 104 - 1273

Fln protein: HDRISTRPFLNTIEKKWLAFQMLYALKQSHEHGVCHGDIKCENVLVTSWSWLYLADYASFKPTYIPDDDPSDFSFFFDTGGRRRCYLAPERFYEPGSEAQIAAD

Protein Length: 105

Fln nts: GCATGACCGAATAAGCACTCGGCCGTTTCTCAATACGATTGAAAAGAAGTGGCTGGCATTCCAGATGCTATATGCTTTGAAGCAGAGCCATGAGCATGGTGTTTGTCACGGTGATATAAAATGTGAAAATGTACTTGTGACCTCTTGGAGTTGGTTGTACCTTGCTGACTATGCATCTTTCAAGCCAACATATATACCTGATGATGATCCATCGGACTTCTCTTTTTTCTTTGACACTGGAGGAAGACGCCGTTGTTATCTTGCACCAGAGCGCTTTTATGAACCAGGAAGTGAGGCTCAGATTGCTGCAGAT

Fln Alignment:

CL16632Contig1___HDRISTRPFLNTIEKKWLAFQMLYALKQSHEHGVCHGDIKCENVLVTSWSWLYLADYASFKPTYIXXXXXXXXXXXXDTGGRRRCYLAPERFYEPGSEAQIAAD
B8AEH2_______________HDRLSTRPFLSKIEKKWLAFQLIHAVEQSHSKGICHGDIKCENVLVTSWNWLYLADFASFKPTYIPDDDPSDFSFFFDTGGRRRCYLAPERFYEHGAETQVAAD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain