SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41732

Length: 220 nt

UniGene Fasta

>sp_v3.0_unigene41732
CGTTCTCGCCGTATTTCTCACCCCACGAACCTCAGAAGTTCGCTTCCGTCCACAAGGTTTTCGGGGCCAGTAACGTCTCCAAAATGCTTCTGGTGCGTTTTATGTTCTGAACTCAAATCTATCATTCACATTCAGCAGAAACATATGCAAGGAATATGACCAATGTTTCTGAAAATATATTAATATGGCTGCCATTTTGTACTAGTACGAACATATCAAT

Ace file of the UniGene sp_v3.0_unigene41732

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB DOMAIN 13 [Arabidopsis thaliana]	-	-	6.0e-09	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Ramosa 2	-	-	1.11e-15	-

Source	Gene names
Sma3	ASL10; ASL11; CRLL4; GSVIVT00009702001; GSVIVT00023965001; GSVIVT00029404001; LBD13; LBD15; LOC_Os03g45750; OJ1276_B06.29; OSJNBa0027N19.13; OSJNBb0065L20.23; Os01g0169400; Os01g0825000; OsI_00567; OsI_04266; OsI_12875; OsI_18591; OsJ_00533; OsJ_03918; Os

Source	GOs	Term	Type	e value	Identity
Sma3	membrane	GO:0016020	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lateral organ boundaries, LOB	IPR004883	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G40470.1	LBD15, ASL11 LOB domain-containing protein 15 chr2:16902430-16903546 REVERSE LENGTH=224	1.0e-13	93%
RefSeq	Arabidopsis thaliana	NP_565933.1	LOB domain-containing protein 15 [Arabidopsis thaliana]	2.0e-13	93%
RefSeq	Populus trichocarpa	XP_002328987.1	predicted protein, partial [Populus trichocarpa]	3.0e-14	96%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2E3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 77 aas, your sequence is shorter than subject: 36 - 179

Fln protein: FSPYFSPHEPQKFASVHKVFGASNVSKMLLVRFMF*

Protein Length: 37

Fln nts: CGTTCTCGCCGTATTTCTCACCCCACGAACCTCAGAAGTTCGCTTCCGTCCACAAGGTTTTCGGGGCCAGTAACGTCTCCAAAATGCTTCTGGTGCGTTTTATGTTCTGAACTCAAATCTATCATTCACATTCAGCAGAAACATATGCAAGGAATATGACCAATGTTTCTGAAAATATATTAATATGGCTGCCATTTTGTACTAGTACGAACATATCAAT

Fln Alignment:

CL16516Contig1___FSPYFSPHEPQKFASVHKVFGASNVSKMLL
A9P2E3_______________FSPYFSPHEPQKFASVHKIFGASNVSKMLM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain