SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41705

Length: 232 nt

UniGene Fasta

>sp_v3.0_unigene41705
GAGTCGACTTTTGTACCTGTAGAACCTTCTAGGTCAGGAATATCTATTGCAGGGGGGCCATCTATAAGCAAGGGTATTTCAAGAAGTTGCAGTCCACAATTGTCACAATGTCAGCTTCTGAACTCACCTTCAAGGGATTTGGATAGTGGATATGGAATTAGCAGCGCTAGTGTAAGGGGGGGTTCTGCAGGTTTAACCGGACTGCAGAACCTTGGGAATACCTGTTTCATGA

Ace file of the UniGene sp_v3.0_unigene41705

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7U6B4_VITVI	-	-	1.0e-11	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	66%

Source	Gene names
Sma3	POPTRDRAFT_1120967; POPTRDRAFT_560337; RCOM_0265980; VITISV_009779;

Source	GOs	Term	Type	e value	Identity
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	0.0	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	IPR006615	-	-
Sma3		IPR010460	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002308863.1	predicted protein [Populus trichocarpa]	9.0e-12	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5CBC6

Fln msg: Distance to subject end: 181 aas, your sequence is shorter than subject: 77 - 518

Fln protein: ESTFVPVEPSRSGISIAGGPSISKGISRSCSPQLSQCQLLNSPSRDLDSGYGISSASVRGGSAGLTGLQNLGNTCFM

Protein Length: 78

Fln nts: GAGTCGACTTTTGTACCTGTAGAACCTTCTAGGTCAGGAATATCTATTGCAGGGGGGCCATCTATAAGCAAGGGTATTTCAAGAAGTTGCAGTCCACAATTGTCACAATGTCAGCTTCTGAACTCACCTTCAAGGGATTTGGATAGTGGATATGGAATTAGCAGCGCTAGTGTAAGGGGGGGTTCTGCAGGTTTAACCGGACTGCAGAACCTTGGGAATACCTGTTTCATGA

Fln Alignment:

CL16239Contig1___ESTFVPVEPXXXXXXXXXXXXXXXXXXRSCSPQLSQCQLLNSPSRDLDSGYGISSASVRGGSAGLTGLQNLGNTCFM
A5CBC6_______________ETMSVLVEPSKSSLSIAGGLSASKGVSRSCSSELSQSQNLTSPVRELDSTYGVSGVSTRGATGGLTGLLNLGNTCFM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain