SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41615

Length: 196 nt

UniGene Fasta

>sp_v3.0_unigene41615
CAATCTCAAAGTCTCATGTGTTGGAAGGGGCCTGATGGGTTACCTTGGCAACAAGGGCTCAATATCAGTTAGCATGACTCTCCATCAGACAAGCTTTTGCTTTATTTGTAGCCATTTGACTTCTGGCCAAAAAGATGGCGATGAGCTCCGGAGGAATTCTGATGTCATGAAAATCATAAAAAAGACTCGCTTTCCA

Ace file of the UniGene sp_v3.0_unigene41615

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative inositol polyphosphate 5'-phosphatase [Arabidopsis thaliana]	-	-	3.0e-28	87%
FL-Next	Isoform 2 of Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2	-	-	0.0	86%
Sma3	Type I inositol polyphosphate 5-phosphatase, putative	-	-	4.861e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	2.746e-07	-
Sma3	Inositol-polyphosphate 5-phosphatase.	EC:3.1.3.56	-	5.909e-23	-

Source	KEGGs	Term	e value	Identity
Sma3	Inositol phosphate metabolism	00562	5.909e-23	%
Sma3	Metabolic pathways	01100	5.909e-23	%
Sma3	Phosphatidylinositol signaling system	04070	5.909e-23	%

Source	Gene names
Sma3	5P1; 5P2; 5PT1; 5PT2; 5PT3; 5PT4; At1g05470; At1g34120; At2g01900; At2g32010; At2g37440; At3g63240; At3g63240/F16M2_90; At4g18010; At5g04980; At5g65090; B1040D06.9; B1339H09.16; CVP2; F12G12.6; F16M2_90; GSVIVT00002655001; GSVIVT00008976001; GSVIVT0001582

Source	GOs	Term	Type	Identity
Sma3	inositol or phosphatidylinositol phosphatase activity	GO:0004437	Molecular Function	-
Sma3	inositol-polyphosphate 5-phosphatase activity	GO:0004445	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	procambium histogenesis	GO:0010067	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	inositol trisphosphate metabolic process	GO:0032957	Biological Process	-
Sma3	inositol phosphate dephosphorylation	GO:0046855	Biological Process	-
Sma3	inositol phosphate-mediated signaling	GO:0048016	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Inositol polyphosphate-related phosphatase	IPR000300	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	YLP motif	IPR004019	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G32010.1	CVL1 CVP2 like 1 chr2:13625344-13628081 FORWARD LENGTH=594	8.0e-36	87%
RefSeq	Arabidopsis thaliana	NP_001189654.1	protein CVP2 like 1 [Arabidopsis thaliana]	1.0e-35	87%
RefSeq	Populus trichocarpa	XP_002300826.1	predicted protein [Populus trichocarpa]	1.0e-36	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LR47-2

Fln msg: Distance to subject end: 177 aas, your sequence is shorter than subject: 65 - 506

Fln protein: NLKVSCVGRGLMGYLGNKGSISVSMTLHQTSFCFICSHLTSGQKDGDELRRNSDVMKIIKKTRFP

Protein Length: 66

Fln nts: CAATCTCAAAGTCTCATGTGTTGGAAGGGGCCTGATGGGTTACCTTGGCAACAAGGGCTCAATATCAGTTAGCATGACTCTCCATCAGACAAGCTTTTGCTTTATTTGTAGCCATTTGACTTCTGGCCAAAAAGATGGCGATGAGCTCCGGAGGAATTCTGATGTCATGAAAATCATAAAAAAGACTCGCTTTCCA

Fln Alignment:

CL15286Contig1___NLKVSCVGRGLMGYLGNKGSISVSMTLHQTSFCFICSHLTSGQKDGDELRRNSDVMKIIKKTRFP
Q9LR47-2_____________NMKVSCVGRGLMGYLGNKGSISISMLLHQTSFCFVCTHLTSGQKEGDELKRNSDVMEILKKTRFP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain