SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41551

Length: 152 nt

UniGene Fasta

>sp_v3.0_unigene41551
GCTCGAGAGGATATACATAGATCTTTTATCAAAGATGAACTACAGACTGTTGTGGCAACTGTTGCCTTTGGCATGGGCATCGATAAGCCCAACATAAGGTGTGTAATACACTATGGATGTCCAAAAAGTCTAGAATCTTATTACCAGGAGAG

Ace file of the UniGene sp_v3.0_unigene41551

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os07g0681600 protein n=3 Tax=Oryza sativa RepID=Q7XHW1_ORYSJ	-	-	2.0e-17	78%
FL-Next	sp=ATP-dependent DNA helicase Q-like SIM; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%

Source	Gene names
Sma3	GSVIVT00022732001; GSVIVT00023902001; MICPUCDRAFT_52663; OSJNBa0008J01.26; Os07g0681600; OsI_27361; OsJ_25607; PHYPADRAFT_10706; PHYPADRAFT_234221; PHYPADRAFT_92210; POPTRDRAFT_1097738; POPTRDRAFT_784763; RCOM_1027520; VITISV_016935;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	DNA recombination	GO:0006310	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase/RNase D C-terminal, HRDC domain	IPR002121	-	-
Sma3	DNA helicase, ATP-dependent, RecQ type	IPR004589	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018329	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G27680.1	RECQSIM RECQ helicase SIM chr5:9794244-9798637 REVERSE LENGTH=858	5.0e-14	63%
RefSeq	Arabidopsis thaliana	NP_568499.1	RECQ helicase SIM [Arabidopsis thaliana]	7.0e-14	63%
RefSeq	Populus trichocarpa	XP_002319444.1	predicted protein [Populus trichocarpa]	2.0e-22	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FT69

Fln msg: Distance to subject end: 273 aas, your sequence is shorter than subject: 50 - 858

Fln protein: AREDIHRSFIKDELQTVVATVAFGMGIDKPNIRCVIHYGCPKSLESYYQE

Protein Length: 51

Fln nts: GCTCGAGAGGATATACATAGATCTTTTATCAAAGATGAACTACAGACTGTTGTGGCAACTGTTGCCTTTGGCATGGGCATCGATAAGCCCAACATAAGGTGTGTAATACACTATGGATGTCCAAAAAGTCTAGAATCTTATTACCAGGAGAG

Fln Alignment:

CL14747Contig1___IHRSFIKDELQTVVATVAFGMGIDKPNIRCVIHYGCPKSLESYYQE
Q9FT69_______________VHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain