SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41431

Length: 461 nt

UniGene Fasta

>sp_v3.0_unigene41431
GTTTTTAACCTCGTCGCTTTCCGGAACCAAAATAAACATCATGTCGCTTACTTCGTGGCGCGGAGGAAACCGGAGGGGCGCATTCGACCCCTACTCTTTCGATGTCTGGGATCCTTTCGATTTCACGGGCAGCTTGTGGGAGCAATTCACGCCCAGGGACCGTCAGGGCGGTGCGCAGGACGCCGCTGCAATTGCTAACACGCAGATCGACTGGAAAGAAACCCCTGACGCTCACATTTTTAAAGCAGATTTACCCGGAATGAGGAAGGACGAGGTGAAGGTTCAGATTGACGAAGGGCGCGTGTTACAGATCCACGGCGAGCGTACCAAAGAGGACGTACAGAACGATGACAAGTGGCACCGCGTGGAAAGACAACATGGTAGCTTCATGCGCCGCTTCCGACTGCCAGATAATGCCAAGCTGGACGAGGTGAAGGCAACCATGGAGGACGGGGTGCTGA

Ace file of the UniGene sp_v3.0_unigene41431

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	17.7 kDa class I small heat shock protein n=2 Tax=Phaseoleae RepID=B4X941_VIGUN	-	-	1.99965e-42	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Heat-shock protein, putative	-	-	9.873e-34	-

Source	Gene names
Sma3	At1g07400; At1g07400/F22G5_20; At1g53540; At1g59860; At2g29500; At3g46230; At5g59720; BcHSP; BcHSP17.6; CJHSP17; F12M12_200; F22G10.20; F23H11.18; GSVIVT00001312001; GSVIVT00005435001; GSVIVT00005438001; GSVIVT00018308001; GSVIVT00018355001; GSVIVT0001835

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G59720.1	HSP18.2 heat shock protein 18.2 chr5:24062632-24063117 FORWARD LENGTH=161	58%
RefSeq	Arabidopsis thaliana	NP_200780.1	heat shock protein 18.2 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002337678.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPB3

Fln msg: Distance to subject end: 23 aas, your sequence is shorter than subject: 140 - 160

Fln protein: MSLTSWRGGNRRGAFDPYSFDVWDPFDFTGSLWEQFTPRDRQGGAQDAAAIANTQIDWKETPDAHIFKADLPGMRKDEVKVQIDEGRVLQIHGERTKEDVQNDDKWHRVERQHGSFMRRFRLPDNAKLDEVKATMEDGVL

Protein Length: 141

Fln nts: GTTTTTAACCTCGTCGCTTTCCGGAACCAAAATAAACATC_-_ATGTCGCTTACTTCGTGGCGCGGAGGAAACCGGAGGGGCGCATTCGACCCCTACTCTTTCGATGTCTGGGATCCTTTCGATTTCACGGGCAGCTTGTGGGAGCAATTCACGCCCAGGGACCGTCAGGGCGGTGCGCAGGACGCCGCTGCAATTGCTAACACGCAGATCGACTGGAAAGAAACCCCTGACGCTCACATTTTTAAAGCAGATTTACCCGGAATGAGGAAGGACGAGGTGAAGGTTCAGATTGACGAAGGGCGCGTGTTACAGATCCACGGCGAGCGTACCAAAGAGGACGTACAGAACGATGACAAGTGGCACCGCGTGGAAAGACAACATGGTAGCTTCATGCGCCGCTTCCGACTGCCAGATAATGCCAAGCTGGACGAGGTGAAGGCAACCATGGAGGACGGGGTGCTGA

Fln Alignment:

CL13377Contig1___MSLTSWRGGNRRGAFDPYSFDVWDPFDFTGSLWEQFTPRDRQGGAQDAAAIANTQIDWKETPDAHIFKADLPGMRKDEVKVQIDEGRVLQIHGERTKEDVQNDDKWHRVERQHGSFMRRFRLPDNAKLDEVKATMEDGVL
A9NPB3_______________MSLVPRLFGSRSSVFDPFSLDLWDPFESANS---PFLGDIGHSARNDATAIANTRLDWKETSDAHIFKADLPGLRKEEVKIEVEDDRVLKISGERKKEEEQKNDKWHRIERSHGKFLRRFRLPENAKVEEVKATMENGVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain