SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41407

Length: 139 nt

UniGene Fasta

>sp_v3.0_unigene41407
AGGAGGCAGGCTATTTGCCTAACAAGAACTTTGTTCTTCACGACGTGCAGGAGGAAGTTAAAGGAGACATTCTCCAGAGTCACAGTGAGAAGTTGGCCATTGCTTTTGGGCTTATTAACACAAGCCCTGGAACACCTCT

Ace file of the UniGene sp_v3.0_unigene41407

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Sma3	Pentatricopeptide repeat protein	-	-	-

Source	Gene names
Sma3	GSVIVT00001706001; GSVIVT00011403001; GSVIVT00020655001; GSVIVT00021586001; GSVIVT00021587001; GSVIVT00022909001; GSVIVT00025530001; GSVIVT00026498001; LOC_Os03g13830; Os03g0241800; OsI_10704; OsI_34497; OsJ_10095; POPTRDRAFT_581687; POPTRDRAFT_773768; PO

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G47580.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:17485668-17486387 FORWARD LENGTH=239	1.0e-13	61%
RefSeq	Arabidopsis thaliana	NP_175189.2	putative lipoyltransferase [Arabidopsis thaliana]	2.0e-13	61%
RefSeq	Populus trichocarpa	XP_002323422.1	predicted protein [Populus trichocarpa]	1.0e-13	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 45 - 795

Fln protein: EAGYLPNKNFVLHDVQEEVKGDILQSHSEKLAIAFGLINTSPGTP

Protein Length: 46

Fln nts: AGGAGGCAGGCTATTTGCCTAACAAGAACTTTGTTCTTCACGACGTGCAGGAGGAAGTTAAAGGAGACATTCTCCAGAGTCACAGTGAGAAGTTGGCCATTGCTTTTGGGCTTATTAACACAAGCCCTGGAACACCTCT

Fln Alignment:

CL13105Contig1___EAGYLPNKNFVLHDVQEEVKGDILQSHSEKLAIAFGLINTSPGTP
B8LQA8_______________KAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain