SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41321

Length: 281 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene41321
TAGATTTTTCCTCACCTGGCTTGAGACAGGGTTCTACCTATCAACAATTGCCTTGGCATTTTTTCCATGACACATCAATGCTACAACAGGTTATACTAGAAGGATTTGGTGTATTTGGAATATCACTTGACACATCTTTTGAAACCAGTGGGTTCTTATATTCTTCCCTTTACTTATTGTTGGAGAAGCTTACCTGTTCAAATTATCACATCCGTAGTGCTGCAGATGTTGCTTTGAGAATGCTATCTGAATCTGCTGGTTATCTATCGGTAAAAGATTTG

Ace file of the UniGene sp_v3.0_unigene41321 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	52%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G79190.1	ARM repeat superfamily protein chr1:29788639-29794116 FORWARD LENGTH=1335	7.0e-15	51%
RefSeq	Arabidopsis thaliana	NP_178040.5	uncharacterized protein [Arabidopsis thaliana]	9.0e-15	51%
RefSeq	Populus trichocarpa	XP_002310678.1	predicted protein [Populus trichocarpa]	8.0e-15	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7KVZ0

Fln msg: Distance to subject end: 470 aas, your sequence is shorter than subject: 93 - 1273

Fln protein: DFSSPGLRQGSTYQQLPWHFFHDTSMLQQVILEGFGVFGISLDTSFETSGFLYSSLYLLLEKLTCSNYHIRSAADVALRMLSESAGYLSVKDL

Protein Length: 94

Fln nts: TAGATTTTTCCTCACCTGGCTTGAGACAGGGTTCTACCTATCAACAATTGCCTTGGCATTTTTTCCATGACACATCAATGCTACAACAGGTTATACTAGAAGGATTTGGTGTATTTGGAATATCACTTGACACATCTTTTGAAACCAGTGGGTTCTTATATTCTTCCCTTTACTTATTGTTGGAGAAGCTTACCTGTTCAAATTATCACATCCGTAGTGCTGCAGATGTTGCTTTGAGAATGCTATCTGAATCTGCTGGTTATCTATCGGTAAAAGATTTG

Fln Alignment:

CL12123Contig1___QQLPWHFFHDTSMLQQVILEGFGVFGISLDTSFETSGFXXXXXXXXLEKLTCSNYHIRSAADVALRMLSESAGYLSVKDL
D7KVZ0_______________QHISLHFLRDSAMLQQVIIEGIGVFSLCLGNDFASSGFLHSSLYLLLESLTCSSFQVRNASDAVLRLLASTSGHPTVGHL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain