SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41057

Length: 430 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene41057
GATACACGTAAGAGCTTGCTTAAATGGCGCTGTCCACGGCTGATCTTCCGACTTTGTATACTTTATTGACGAATGCGTTGAGTCCGGATGAGAATTTGCGCAAGCCTGCTGAGGCAACTCTGTCGTCCTGTGAAAGTAAACCAGGCTTCTGCTCCTGTCTCTTGGAGATCATTGCTGCGAAGGATTTGGAGACGCAAAATAATACCCGTTGGTTGGCATCAGTCTACTTCAAGAATAGCATAAATCGATATTGGAGGCAGAGGCGAGATTCTCTAGGTATAAGCAGTTCAGAGAAACCATATTTGCGAAAGAAACTTTTGGAACTCATACGGGAGGAAAATCTTCAGATTGCAGTTCAAATGGCTGTTTTGGTGTCAAAAATTGCACGCTTCGACTATCCAAAAGAATGGCCAGAGCTCTTCTCTATTCT

Ace file of the UniGene sp_v3.0_unigene41057 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam03810, IBN_N, Importin-beta N-terminal domain	-	-	4.0e-13	37%
FL-Next	sp=Exportin-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	31%

Source	Gene names
Sma3	At3g08960; GSVIVT00038854001; LOC_Os03g18190; Os07g0693400; OsI_11118; OsI_27439; OsJ_25691; P0034A04.128; PHYPADRAFT_136021; PHYPADRAFT_152314; POPTRDRAFT_777866; RCOM_0489610; T16O11.8;

Source	GOs	Term	Type	Identity
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein import into nucleus, docking	GO:0000059	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Glucagon/GIP/secretin/VIP	IPR000532	-	-
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Exportin-1/Importin-beta-like	IPR013598	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G08960.1	ARM repeat superfamily protein chr3:2730405-2736762 REVERSE LENGTH=1010	63%
RefSeq	Arabidopsis thaliana	NP_187508.5	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002323597.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9ZPY7

Fln msg: Distance to subject end: 836 aas, your sequence is shorter than subject: 135 - 972

Fln protein: MALSTADLPTLYTLLTNALSPDENLRKPAEATLSSCESKPGFCSCLLEIIAAKDLETQNNTRWLASVYFKNSINRYWRQRRDSLGISSSEKPYLRKKLLELIREENLQIAVQMAVLVSKIARFDYPKEWPELFSI

Protein Length: 136

Fln nts: GATACACGTAAGAGCTTGCTTAA_-_ATGGCGCTGTCCACGGCTGATCTTCCGACTTTGTATACTTTATTGACGAATGCGTTGAGTCCGGATGAGAATTTGCGCAAGCCTGCTGAGGCAACTCTGTCGTCCTGTGAAAGTAAACCAGGCTTCTGCTCCTGTCTCTTGGAGATCATTGCTGCGAAGGATTTGGAGACGCAAAATAATACCCGTTGGTTGGCATCAGTCTACTTCAAGAATAGCATAAATCGATATTGGAGGCAGAGGCGAGATTCTCTAGGTATAAGCAGTTCAGAGAAACCATATTTGCGAAAGAAACTTTTGGAACTCATACGGGAGGAAAATCTTCAGATTGCAGTTCAAATGGCTGTTTTGGTGTCAAAAATTGCACGCTTCGACTATCCAAAAGAATGGCCAGAGCTCTTCTCTATTCT

Fln Alignment:

CL8365Contig1___NALSPDENLRKPAEATLSSCESKPGFCSCLLEIIAAKDLETQNNTRWLASVYFKNSINRYWRQRRDSLGIS---SSEKPYXXXXXXXXXXXXXLQIAVQMAVLVSKIARFDYPKEWPEL
Q9ZPY7_______________NTLSPIPEPRRTAERALSDAADQANYGLAVLRLVAEPAIDEQ--TRHAAAVNFKNHLRSRWHPAGDS-GISPIVDSEKEQIKTLIVSLMLSASPRIQSQLSEALTVIGKHDFPKAWPAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain