SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41003

Length: 2588 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene41003
AGGATAAATAAAGCACAAGAATTTTTTTCATTCCATTGATAAAGGAATAAGTATGGAATCAGAATTCACTGAATGTGATAGTTCAGATCAGACCTAAGTTTAAGCGAATCTATGTTATTTTAAAAGATAAAAGGTCACGTACCTAAAACATCAAATTTATTTTCATGTATGTTATTTTAGTAGTACTTCACACATGCCACATACTTGGAAGAGCAAGGTTTCTCTCACTGTTGTGACTGGGCATTTGATATTTTCATGTTATTTTAGTAGTACTTCACCCATGACCACATGCTTGGAAGAGCAGGGTTTCTCTCACTGTTGTGACTCGGCATTTGATATGTCTATTAAACACCTGGCGGGCATACTTGTTGGGGAGACATTTCCAAATCCACACAAACCATCAAAAACTAAAATATTTTTTGGAGCAACGTCTATCATCGCCACAGAAAAATAAATGGTTGGCCAAAATGTTGGGATATGATTATGAGATTATTTAAAAGAAAGGGCATGACAACGTAGTAGCTGATACTTTATCCCGCCAATTTGAGGATGAAAGCACCCTGCTATCAATCTCTCTTCCCTTACCATATTGGATTGAAGAGGCCCACAAGGAATGGTTCTCACACCCCTCTCTTTCCCAACCTATTAATAACTTGAGAGAAGATCCTAATTCCTGAACCAACTACACTTGGAAGGGTGATATTCTTGGATACAAGGATCGAGTAGTTATATCGTCGGCATCCACCCTCAAAACCCGCATTTTGGGAGAGTTGCACTCATCTCCAACTGCGGGGCATTCAGTGTTTCAAAAGACTTATCTCGCGCTTGTCGTTCTTTCTTTTGGACTGGCATGAAAAACGGCACTCTTACTTTTGTCGCTGAATATGATATGTGTCAACGCAACAAAGGAGAAACAGTCAAGTTACCGGGAACCTTATAGCCACTGCCACTCCCTGCCTCTGTCTAGACGGATGTTTCCATGGATTTCATCACTAGTCTCCCAACGTCGGGCAACAAATCCATCATCATGGTGGTTGTGGACAAACTTTCTAAATATGTTCTTTTTGTGCTCTACCCCACCCATTTACCTCCACTTTGGTGGCTCAAGCTTTCATGGACTAGATCTTCAAACTGCATGGCACGCGAACTTCCATTGCGTCTAATCACGACCCCACTTTCACCAGCAAATTTTGGCAAGAACTTTTCAAGCTACAAGGCACACAACTCCAACTAAGTACCGCCTATCATCCCTAGACCGATGGTCAAACAGAAGCAGTCAACAAATGTTTGGAGACATATCTAAGGTGCTTCACTTCAGAAAAGCGGCATCAATGGGTACAGGTGCTACCTTTAGCTGAATGGTGTATAATACTAACTATCATGAAGCCACCAAGATGACTCCATACGAGGCATTGTATGGCCAACTCCCACCTTCACGTATTTATTATATCCCTGGATGTTTTAAGGTGCAGGCAGTTGATCAACTCCTACAAAACCGTGCCACCATGATAGCTCATCTCAAAGATAATCTATATCAAGCTCAGAGTCTAATGAAGCAATAGGCAGACCAGCATCGTTCCAAGCGCACATTTCAAGGGGATCACATATTCCTGCAATTGCAACCATATAAGCAAACATCTCTCAAAGAAAAGGGTTTCCAGAACTAGCATAAAAATTCTATGGACCTTATCAGATACTTCAGCGCATTGGAGCAGTTGCCTACAAACTGGCCTTGCCACCAACTTCAAAAATCTATCCAGTCTTCCATGTATCATGCCTCAAGAAAGTGGTGGGGAACAATTGCAATTTTCAAACCAGTCTACCCAAATTGGATGAGGAAGGCTCACTCTGGCTCCAACTAGAACAAGCCCTCGATACTCGTGAAAGACATCTCTGCGACCGCACAATCAAGGAAGTCCTCGTCAAGTGGAAAGACACCTCTCTAGAAGATGCGATCTAGGAACCAACCACTAGTCTTCAACAGTTTCCGCAACTTCAACCTCCAGGACAAGGCTGCTTTTGATGGGGGTGGCATGTTAGGGTCCAACCCTAACCCCTTTATTTAAGTAATAATCCCAATGGGCCGAGTCATAGTAATAGTTAGTTAGAAAGTAAATAAAGCCCGCATTAATAATTGTAAGTGGTTGACCCGCATTAGATAAAAGGGACCACAATTAGTTGTACGCGGGCAATAGTTAATAAATAAAGTGGTTAACCCGTGTTATGCAAGGGACCACTAGTAGTTAGGGTTTTGGATGTCATTTAGCTCTAAATAGTCTTAGTCAGTAAAGGAAAGATCATAGAGTTTTATTGTAATCGAACTCTGCTCTGCAGGAGGTTGCCCCCTCGAAGAAGCAAGTGAAGATTGAATCTATTTCTAAATAATAAAATACTTGCTGATTTACTCATTTTATTCTGTGTTTTGGGCTATATTTCTTCGCATTTCTAGTATTCTAGAATTTCTTGCAGGTCAAGAGCACAACAATCGTTGGGTCAGGTTCGGCCGCAATCGTGCAAAGGGGAGGAAAAAAAATTAATTAGCAAAGGAACTCGGTTGTATAGTGGTATGAACCCGCAGAAAAGAAAGA

Ace file of the UniGene sp_v3.0_unigene41003 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH	-	-	0.0	55%
FL-Next	tr=Gypsy/Ty-3 retroelement polyprotein; 69905-74404; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	34%
Sma3	Retrotransposon protein, putative, unclassified	-	-	6.424e-18	-

Source	Gene names
Sma3	At2g14640; F23H6.1; H0321H01.8; H0502G05.7; LOC_Os03g05340; LOC_Os03g13350; LOC_Os03g29864; LOC_Os03g47870; LOC_Os10g16880; LOC_Os10g28310; LOC_Os10g37620; LOC_Os10g40890; LOC_Os10g42880; LOC_Os11g06400; LOC_Os11g08610; LOC_Os11g32060; LOC_Os11g35200; LOC

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	carbon utilization	GO:0015976	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Protein of unknown function DUF594	IPR007658	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	S15/NS1, RNA-binding	IPR009068	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: Q9LHM4

Fln msg: Separated hits, possible frame ERROR between 800 and 1063, Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 55 aas, putative chimeric sequence, your sequence is shorter than subject: 612 - 1499

Fln protein: DK*STRIFFIPLIKE*VWNQNSLNVIVQIRPKFKRIYVILKDKRSRT*NIKFIFMYVILVVLHTCHILGRARFLSLL*LGI*YFHVILVVLHP*PHAWKSRVSLTVVTRHLICLLNTWRAYLLGRHFQIHTNHQKLKYFLEQRLSSPQKNKWLAKMLGYDYEII*KKGHDNVVADTLSRQFEDESTLLSISLPLPYWIEEAHKEWFSHPSLSQPINNLREDPNS*TNYTWKGDILGYKDRVVISSASTLKTRILGELHSSPTAGHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFCALPHPFTSTLVAQAFMD*IFKLHGTRTSIASNHDPTFTSKFWQELFKLQGTQLQLSTAYHP*TDGQTEAVNKCLETYLRCFTSEKRHQWVQVLPLAEWCIILTIMKPPR*LHTRHCMANSHLHVFIISLDVLRCRQLINSYKTVPP**LISKIIYIKLRV**SNRQTSIVPSAHFKGITYSCNCNHISKHLSKKRVSRTSIKILWTLSDTSAHWSSCLQTGLATNFKNLSSLPCIMPQESGGEQLQFSNQSTQIG*

Protein Length: 613

Fln nts: AGGATAAATAAAGCACAAGAATTTTTTTCATTCCATTGATAAAGGAATAAGTATGGAATCAGAATTCACTGAATGTGATAGTTCAGATCAGACCTAAGTTTAAGCGAATCTATGTTATTTTAAAAGATAAAAGGTCACGTACCTAAAACATCAAATTTATTTTCATGTATGTTATTTTAGTAGTACTTCACACATGCCACATACTTGGAAGAGCAAGGTTTCTCTCACTGTTGTGACTGGGCATTTGATATTTTCATGTTATTTTAGTAGTACTTCACCCATGACCACATGCTTGGAAGAGCAGGGTTTCTCTCACTGTTGTGACTCGGCATTTGATATGTCTATTAAACACCTGGCGGGCATACTTGTTGGGGAGACATTTCCAAATCCACACAAACCATCAAAAACTAAAATATTTTTTGGAGCAACGTCTATCATCGCCACAGAAAAATAAATGGTTGGCCAAAATGTTGGGATATGATTATGAGATTATTTAAAAGAAAGGGCATGACAACGTAGTAGCTGATACTTTATCCCGCCAATTTGAGGATGAAAGCACCCTGCTATCAATCTCTCTTCCCTTACCATATTGGATTGAAGAGGCCCACAAGGAATGGTTCTCACACCCCTCTCTTTCCCAACCTATTAATAACTTGAGAGAAGATCCTAATTCCTGAACCAACTACACTTGGAAGGGTGATATTCTTGGATACAAGGATCGAGTAGTTATATCGTCGGCATCCACCCTCAAAACCCGCATTTTGGGAGAGTTGCACTCATCTCCAACTGCGGGGCATTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTTTGTGCTCTACCCCACCCATTTACCTCCACTTTGGTGGCTCAAGCTTTCATGGACTAGATCTTCAAACTGCATGGCACGCGAACTTCCATTGCGTCTAATCACGACCCCACTTTCACCAGCAAATTTTGGCAAGAACTTTTCAAGCTACAAGGCACACAACTCCAACTAAGTACCGCCTATCATCCCTAGACCGATGGTCAAACAGAAGCAGTCAACAAATGTTTGGAGACATATCTAAGGTGCTTCACTTCAGAAAAGCGGCATCAATGGGTACAGGTGCTACCTTTAGCTGAATGGTGTATAATACTAACTATCATGAAGCCACCAAGATGACTCCATACGAGGCATTGTATGGCCAACTCCCACCTTCACGTATTTATTATATCCCTGGATGTTTTAAGGTGCAGGCAGTTGATCAACTCCTACAAAACCGTGCCACCATGATAGCTCATCTCAAAGATAATCTATATCAAGCTCAGAGTCTAATGAAGCAATAGGCAGACCAGCATCGTTCCAAGCGCACATTTCAAGGGGATCACATATTCCTGCAATTGCAACCATATAAGCAAACATCTCTCAAAGAAAAGGGTTTCCAGAACTAGCATAAAAATTCTATGGACCTTATCAGATACTTCAGCGCATTGGAGCAGTTGCCTACAAACTGGCCTTGCCACCAACTTCAAAAATCTATCCAGTCTTCCATGTATCATGCCTCAAGAAAGTGGTGGGGAACAATTGCAATTTTCAAACCAGTCTACCCAAATTGGATGA___GGAAGGCTCACTCTGGCTCCAACTAGAACAAGCCCTCGATACTCGTGAAAGACATCTCTGCGACCGCACAATCAAGGAAGTCCTCGTCAAGTGGAAAGACACCTCTCTAGAAGATGCGATCTAGGAACCAACCACTAGTCTTCAACAGTTTCCGCAACTTCAACCTCCAGGACAAGGCTGCTTTTGATGGGGGTGGCATGTTAGGGTCCAACCCTAACCCCTTTATTTAAGTAATAATCCCAATGGGCCGAGTCATAGTAATAGTTAGTTAGAAAGTAAATAAAGCCCGCATTAATAATTGTAAGTGGTTGACCCGCATTAGATAAAAGGGACCACAATTAGTTGTACGCGGGCAATAGTTAATAAATAAAGTGGTTAACCCGTGTTATGCAAGGGACCACTAGTAGTTAGGGTTTTGGATGTCATTTAGCTCTAAATAGTCTTAGTCAGTAAAGGAAAGATCATAGAGTTTTATTGTAATCGAACTCTGCTCTGCAGGAGGTTGCCCCCTCGAAGAAGCAAGTGAAGATTGAATCTATTTCTAAATAATAAAATACTTGCTGATTTACTCATTTTATTCTGTGTTTTGGGCTATATTTCTTCGCATTTCTAGTATTCTAGAATTTCTTGCAGGTCAAGAGCACAACAATCGTTGGGTCAGGTTCGGCCGCAATCGTGCAAAGGGGAGGAAAAAAAATTAATTAGCAAAGGAACTCGGTTGTATAGTGGTATGAACCCGCAGAAAAGAAAGA

Fln Alignment:

CL7703Contig1___RVSLTVVTRHLICLL---NTWRAYLLGRHFQIHTNHQKLKYFLEQRLSSPQKNKWLAKMLGYDYEII*KKGHDNVVADTLSRQFEDESTLLSISLPLPYWIEEAHKEWFSHPSLSQPINNLREDPNS*TNYTWKGDILGYKDRVVISSASTLKTRILGELHSSPTAGHSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFCALPHPFTSTLVAQAFMD*IFKLHGTRTSIASNHDPTFTSKFWQELFKLQGTQLQLSTAYHP*TDGQTEAVNKCLETYLRCFTSEKRHQWVQVLPLAEW
Q9LHM4_______________QLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGYANDSQLQDIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain