SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene40982

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene40982
CTATCTCAATCAATTCAAACAAGACTTTGCAGAATTCTTAAGTGCTAGAGCGGCAGAAATTATTCCTGGAGGATGCATGTTCATCGCTACCTTGGCCCGTAATTCTGCGGCCATAAAGGAACAAAGCGGGTTGGGAGCTTGCGCTTTTCACTTGGAGGTTGCATTTCTGGAGCTGGTGAATGAGGGTTTGATTGAGGCGGACAAACTAGACTCCTTCAACATTCCTTACTATGGTCCAAGTG

Ace file of the UniGene sp_v3.0_unigene40982

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	IAA carboxylmethyltransferase 1 [Arabidopsis thaliana] gb\|AED96606.1\| IAA carboxylmethyltransferase 1 [Arabidopsis thaliana]	-	-	1.0e-12	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Source	GOs	Term	Type	e value	Identity
Sma3	methyltransferase activity	GO:0008168	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SAM dependent carboxyl methyltransferase	IPR005299	-	0.0	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G55250.1	IAMT1 IAA carboxylmethyltransferase 1 chr5:22407589-22410854 REVERSE LENGTH=386	3.0e-17	49%
RefSeq	Arabidopsis thaliana	NP_001078756.1	IAA carboxylmethyltransferase 1 [Arabidopsis thaliana]	3.0e-17	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQW8

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 80 - 394

Fln protein: YLNQFKQDFAEFLSARAAEIIPGGCMFIATLARNSAAIKEQSGLGACAFHLEVAFLELVNEGLIEADKLDSFNIPYYGPS

Protein Length: 81

Fln nts: CTATCTCAATCAATTCAAACAAGACTTTGCAGAATTCTTAAGTGCTAGAGCGGCAGAAATTATTCCTGGAGGATGCATGTTCATCGCTACCTTGGCCCGTAATTCTGCGGCCATAAAGGAACAAAGCGGGTTGGGAGCTTGCGCTTTTCACTTGGAGGTTGCATTTCTGGAGCTGGTGAATGAGGGTTTGATTGAGGCGGACAAACTAGACTCCTTCAACATTCCTTACTATGGTCCAAGTG

Fln Alignment:

CL7436Contig1___YLNQFKQDFAEFLSARAAEIIPGGCMFIATLARNSAAIKEQSGLGACAFHLEVAFLELVNEGLIEADKLDSFNIPYYGPS
A9NQW8_______________YLNQFKQDFAAFLDARAEEIIPGGCMFTALLGRNSADVKEQSGLGACAFHLEAAFQELVNEGLIEEEKLDSFNIPYYGPS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain