SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene40976

Length: 318 nt

UniGene Fasta

>sp_v3.0_unigene40976
TCTATACTTAAAAGTTACACTTTCTCTCTGGCTTGTGCCTTGTTTGCCAGCATAGACAATCAGGAAGAACAAGCTAGGCTTTGGCATCATTTTGAGGTTTTCGGTAAAGGAGTACTGCAGATTCCCATAGACGTACCCGGCACCCGACATAACAAGGCCAAACATGCAGCTAATGCCATTCGTGATCAACTCGACGCCGTTATTGATGCAGATGAAAATAGAATTCAAGTTTTTAATTGAAGTTTAGTCTCATTCACAAGCGGAGTGAAGAATAGAAGCCATGGCCACTCGACCAGAGAATCAGGCGCCCCCTGAGAT

Ace file of the UniGene sp_v3.0_unigene40976

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 716B2 n=2 Tax=Picea sitchensis RepID=C16B2_PICSI	-	-	7.0e-21	70%
FL-Next	sp=Cytochrome P450 716B2; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%

Source	Gene names
Sma3	CYP716B1; CYP716B2;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002299099.1	cytochrome P450 [Populus trichocarpa]	1.0e-14	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q50EK0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 203 aas, your sequence is shorter than subject: 80 - 497

Fln protein: SILKSYTFSLACALFASIDNQEEQARLWHHFEVFGKGVLQIPIDVPGTRHNKAKHAANAIRDQLDAVIDADENRIQVFN*

Protein Length: 81

Fln nts: TCTATACTTAAAAGTTACACTTTCTCTCTGGCTTGTGCCTTGTTTGCCAGCATAGACAATCAGGAAGAACAAGCTAGGCTTTGGCATCATTTTGAGGTTTTCGGTAAAGGAGTACTGCAGATTCCCATAGACGTACCCGGCACCCGACATAACAAGGCCAAACATGCAGCTAATGCCATTCGTGATCAACTCGACGCCGTTATTGATGCAGATGAAAATAGAATTCAAGTTTTTAATTGAAGTTTAGTCTCATTCACAAGCGGAGTGAAGAATAGAAGCCATGGCCACTCGACCAGAGAATCAGGCGCCCCCTGAGAT

Fln Alignment:

CL7382Contig1___ILKSYTFSLACALFASIDNQEEQARLWHHFEVFGKGVLQIPIDVPGTRHNKAKHAANAIRDQLDAVID
Q50EK0_______________LLKRYTFSLACDLFASINNKDDLGRLWLHFMVFVKGVMQIPIDLPGTRYNKAKHAANAIRQQLGSIIN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain