SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene40905

Length: 1431 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene40905

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin-induced protein 3 n=1 Tax=Pinus taeda RepID=Q7XYT4_PINTA	-	-	89%
FL-Next	tr=Auxin-induced protein 3; Pinus taeda (Loblolly pine).	-	-	93%
Sma3	Auxin-induced protein 3	-	-	-

Source	Gene names
Sma3	IAA3;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AUX/IAA protein	IPR003311	-	0.0	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G04730.1	IAA16 indoleacetic acid-induced protein 16 chr3:1288993-1290415 REVERSE LENGTH=236	45%
RefSeq	Arabidopsis thaliana	NP_187124.1	auxin-responsive protein IAA16 [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002319075.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q7XYT4

Fln msg:

Fln protein: MSCSVGNMAMVLEKSGGNPQREKRDSLDFAETELKLGLPGVAAGERQRICGKRSFSEAMESRNYTIPDEDITNTRTDEDVDKFKGPIVKEKQMALPANGPPRMGPPPPPKAQVVGWPPVKDFRKVRTVAASNSLYVKVSMDGAPYLRKVDLKMYSTYHELTSALKKMFSCLITMGKCGSLALNEGNLMDLPNGSEYVPTYEDKDGDWMLVGDVPWQMFVDSCQRMRIMTASEAIGLAPRAMENCKNRNRVHP*

Protein Length: 254

Fln nts: GAACCAAAGAATCAATAACTCCGTGTTTGTTACAGAGCAAAGATCTTTTGCAAGTATTCTTCCTTTTTCTCCTCTTTTGGGGTTGTTTCAATCTTGGGCTCTGATATCTTCAGAGGAAGGACTAGGACTTTTTCGTTACAGGTTGTGCAGAATCAAC_-_ATGTCTTGCAGTGTTGGAAACATGGCCATGGTCTTGGAGAAATCTGGTGGGAACCCGCAGCGTGAGAAGAGAGATAGTTTAGATTTCGCGGAGACTGAACTGAAGCTTGGACTCCCAGGAGTAGCTGCAGGGGAACGCCAGAGGATCTGTGGCAAAAGAAGCTTCTCGGAGGCCATGGAGTCCAGAAATTACACCATTCCAGATGAAGACATTACAAATACCAGGACAGATGAGGACGTTGATAAATTCAAGGGACCTATAGTCAAAGAAAAACAAATGGCCCTTCCAGCCAATGGCCCTCCAAGAATGGGACCTCCACCTCCTCCGAAGGCACAGGTTGTGGGATGGCCACCTGTCAAAGATTTCAGGAAAGTGAGAACAGTTGCTGCATCCAATTCTCTGTATGTGAAGGTGAGCATGGATGGAGCTCCTTATCTCAGAAAGGTGGACCTCAAAATGTACAGCACCTACCATGAACTCACCTCTGCACTAAAGAAGATGTTCAGCTGCTTAATTACCATGGGCAAGTGTGGATCCCTTGCGTTGAACGAGGGCAATTTAATGGATTTGCCCAATGGGTCAGAATATGTGCCTACTTATGAAGATAAGGATGGAGATTGGATGCTTGTAGGCGATGTCCCATGGCAGATGTTTGTTGATTCCTGCCAAAGAATGCGGATCATGACGGCTTCGGAAGCTATTGGTTTAGCGCCAAGGGCCATGGAAAATTGTAAAAACAGGAATAGAGTCCACCCATAA___TGTTCATTGTTCAGTGAATCTGGAACCTGATTATTCATGATATTTTTTTTGACTTTTGAGGAGGGCATATTCAATCAGCTTCTATCTAACGCATGTGTTAGAAATTACGATAGTCGATCCAATACCCTGCATGGGATCGGATGGTCGCTGACTGTTTTAATTGGAGATGTTACCAGGTTGGGGGCGATCGCGCCTCCGTCTGCAGAATCCCGACTAATCTATTCTATGGTTTTATAGAACTGGCATTTTCAGAAGCTATGTGTAGTAAACAAATATGGTGGTTAGGCAAATACAGTTTGGAGGACCCAGAAATTTCACTGTAAATGATTACTGGAAAGATTGATTATTTAGAATCTAATTTGCTTTCAAACCAATCGTAACTTGGTGCAATATGCACGTACTGAGCCGGCTGTTATTTGTTATTATCTGAGATGGAATATGATTGTTTATCCGCGATGGCCGGAGATGAGCTAAATTTAAAAACCCTCTGTATTTATATGATGTGATTGTTTCCA

Fln Alignment:

CL6289Contig1___MSCSVGNMAMVLEKSGGNPQREKRDSLDFAETELKLGLPGVAAGERQRICGKRSFSEAMESRNYTIPDEDITNTRTDEDVDKFKGPIVKEKQMALXXXXXXXXXXXXXXKAQVVGWPPVKDFRKVRTVAASNSLYVKVSMDGAPYLRKVDLKMYSTYHELTSALKKMFSCLITMGKCGSLALNEGNLMDLPNGSEYVPTYEDKDGDWMLVGDVPWQMFVDSCQRMRIMTASEAIGLAPRAMENCKNRNRVHP
Q7XYT4_______________MSCSVGNMAMVLEKSGGNAQHEKRDSLDFAETELKLGLPGVAAGARQRICGKRSFSEAMESRNYTIPDEDITNTSTHEDLDKFKGPIVKEKQMALSANDPPRMGPPPPSKAQVVGWPPVRDFRKVRTVAASNSLYVKVSMDGAPYLRKVDLKLYSTYHELTSALEKMFSCLIIMGKCGSLALNESNLMDLPNGSEYVPTYEDKDGDWMLIGDVPWQMFVDSCQRMRIMTASEAIGLAPRTMENCKNRNRVHP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain