SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene40701

Length: 1858 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene40701

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor FAMA [Arabidopsis thaliana] sp\|Q56YJ8.1\|FAMA_ARATH RecName: Full=Transcription factor FAMA; AltName: Full=Basic helix-loop-helix protein 97; Short=AtbHLH97; Short=bHLH 97; AltName: Full=Transcription factor EN 14; AltName: Full=bHLH t	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	DNA binding protein, putative	-	-	4.054e-11	-

Source	Gene names
Sma3	At1g22490; At1g72210; At2g46810; At3g24140; At3g61950; At4g01460; At5g46690; BHLH57; BHLH67; BHLH70; BHLH71; BHLH94; BHLH96; BHLH97; EN11; EN12; EN13; EN14; EN15; EN16; EN17; F11O4.13; F12K8.16; F19D11.9; F21F14.120; FMA; GSVIVT00015166001; GSVIVT00015749

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	guard cell differentiation	GO:0010052	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	positive regulation of cell differentiation	GO:0045597	Biological Process	-
Sma3		GO:0045941	Biological Process	-
Sma3	negative regulation of cell division	GO:0051782	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR001092	-	0.0	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G24140.1	FMA basic helix-loop-helix (bHLH) DNA-binding superfamily protein chr3:8715525-8717772 REVERSE LENGTH=414	49%
RefSeq	Arabidopsis thaliana	NP_189056.2	transcription factor FAMA [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002326728.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLL6

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 339 - 457

Fln protein: MEIMEEMIEIPRLNDNIGLNIPWLHGGLFRKRLTSSPLHNEPAGKQANMGPNMENYFTRLVQGFEPGESCVTALSDLKPGGNNIDTFNAVQSHSDTAEDGISDTTQEDQQNAISIAVPAADAGKGRKRKRQKVSKNSEEALSQRITHIEVERNRRKQMNAHLDVLRSLIPQSYIQRGDQASIIGGAIDLVKELEQVLQSLQFQKIKRENVDRTDPTNCLSILPPPQSSARCNSKCVVDTSSSQVRALEDKSSIADIEVTLIETHGSLKILSKKKHGQLLKIITALESFHMTILHLNITSMDETVVFSFNVKVEDECQLTSANEIASSLHQILRIVHAC*

Protein Length: 340

Fln nts: GTCAGTCTTCTCACAGTCAAATAAATAAAGAAAACGCTGAGAATTTCGATTATGGCGTGGCTTGCTTCCTTTCAATTTTATATTTTTTTGGGGTTCCCGGGTTTGAAATCGGGGAAGAATGAGTAGGGAACCGAATTCGATAAGTTTCTTTCTCGACTGTCTCGCACCAGTTTGACTGCTCTGTGAAAGAAAAACCCATATCATAATACAGAATACAATTGTTCTGCAGAGTCCTTTTTGAGTTGGGTACTTTCCAGGCTCGTGGCTATAGAGAGCTTCAGCAGCAGAGAGAAGAAAAATTGAAGactgaAGCGAAAGTCCCGGCTAACTCGAATCAGATTATGAGCTGCCCTGATCGCCCCAACAAAGCGTTTGAGCTTTAGGAAGCC_-_ATGGAAATAATGGAAGAAATGATAGAAATTCCCCGCTTGAATGACAACATCGGCCTGAACATTCCGTGGCTTCATGGAGGCCTTTTTCGAAAGCGCTTGACATCTTCTCCCCTCCACAATGAGCCGGCCGGCAAGCAAGCAAATATGGGGCCTAATATGGAAAACTACTTCACGCGACTAGTCCAGGGATTCGAACCTGGGGAGAGCTGTGTAACAGCTCTTTCTGACCTGAAACCCGGTGGCAACAATATTGATACTTTCAATGCTGTTCAGTCGCACTCGGACACGGCTGAAGATGGTATAAGCGACACCACACAGGAGGATCAGCAAAATGCAATTTCCATCGCGGTCCCTGCTGCCGACGCCGGGAAGGGGAGAAAGAGGAAACGCCAGAAGGTTTCCAAGAACAGCGAAGAAGCACTGAGCCAAAGGATTACTCATATTGAAGTGGAGCGCAACCGCAGGAAGCAGATGAATGCTCATTTGGACGTCTTGCGTTCCCTCATTCCTCAATCCTACATTCAAAGAGGAGATCAAGCATCTATTATAGGAGGGGCTATTGATTTAGTGAAAGAGTTGGAGCAGGTCTTGCAGTCGCTTCAATTTCAGAAGATTAAAAGGGAAAACGTAGACAGAACTGATCCAACAAACTGTCTATCAATCCTCCCGCCTCCCCAGTCCTCTGCGCGGTGCAATTCAAAATGCGTTGTAGACACCAGCAGCAGCCAGGTCAGAGCATTGGAAGACAAATCCTCGATAGCAGACATAGAGGTGACATTGATCGAAACACATGGCAGCCTCAAAATTCTCTCTAAGAAGAAGCACGGGCAGCTCTTGAAGATCATCACTGCTCTCGAAAGCTTTCATATGACAATCCTGCATCTCAATATTACCTCAATGGACGAGACTGTGGTCTTCTCTTTCAACGTCAAGGTAGAAGATGAATGCCAACTTACATCAGCGAATGAGATAGCAAGCTCCCTTCACCAAATTTTGAGAATAGTGCATGCGTGCTAATGGCTCTCATTGAAAATGCCCGTCTTCTTGCTCGCAGGTGTACATACATCCATTCTCTGCTTTTGTATCAACCATATATAGTGAAGAAAATTTGTGTGTTCTCTGTAATATGGTTAGTTCTTTTGTTTTAATACTGGTTCTGGCTTTCAATAGATATCTGTATCAGTCTATCGAACTGGCTGCCTCTCTTTTTATAGCACTCAACTACAAACTACAAAGTATCGATAGAAAAGAAATTGGTCGAAGTATCGATAGAGAGGAAATTGGTCGACTGCTCAAGTAGCATACCAATTCAAAGTTAAGATTGGATAAAGCCAATGCTAATGGGCTTAATTGCTCCCATAATGTTGTTTTAAAAATGTTGCCTTAACGACTAAAATCAACCATGGCATATGGTGGATCTCCCCTCATAGACATGTATCTTTCCATGATCGATATATATAAAAGGTTGG

Fln Alignment:

CL3044Contig1___QGFEPGESCVTALSDLKPGGNNIDTFNAVQSHS--DTAEDGISD---------TTQEDQQNAI------SIAVPAADAGKG-----------RKRKRQKVSKNSEEALSQRITHIEVERNRRKQMNAHLDVLRSLIPQSYIQRGDQASIIGGAIDLVKELEQVLQSLQFQKIKRE------NVDRTDPTNCLSILPPPQS-SARCNSKCVVDTSS----SQVRALEDKSSIADIEVTLIETHGSLKILSKKKHGQLLKIITALESFHMTILHLNITSMDETVVFSFNVKVEDECQLTSANEIASSLHQILRIVHA
B8LLL6_______________QLFEP-ESCITHVSE---SCSPIKT-EACKDHSSSDAIEEGVSSAALDPNSCITTNSSSENGTGGGFVTSSMMPSSTGPSSQLSTRMEVRDRRKRKRSKACKNSEEVESQRMTHIAVERNRRKQMNEHLSVLRSLMPGSYIQRGDQASIIGGAIDFVKELEQLLQSLQAQKRKRECEEFGCSPNSPTPFNGFFLSPQYTSYSAQWNSRYAVEKTSFNDTGNELIAENKSAVADIEVTMIETHASIKILSQKRSGQLMKTIDKLQSLHMTILHLNITTIDQTVLYSFNVKIEDECQLTSADEIATAVHEIINSIHS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain