SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene40608

Length: 1303 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene40608 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558	-	-	0.0	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	Retrotransposon protein, putative, unclassified	-	-	1.93e-15	-

Source	Gene names
Sma3	At2g05610; F23H6.1; H0321H01.8; H0502G05.6; LOC_Os03g05340; LOC_Os03g05350; LOC_Os03g06110; LOC_Os03g10000; LOC_Os03g13350; LOC_Os03g61190; LOC_Os10g13960; LOC_Os10g16880; LOC_Os10g28310; LOC_Os10g37610; LOC_Os10g40890; LOC_Os11g08610; LOC_Os11g32060; LOC

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	carbon utilization	GO:0015976	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	FBD	IPR006566	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	S15/NS1, RNA-binding	IPR009068	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	MULE transposase domain	IPR018289	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWN2

Fln msg: STOP codon was not found. Distance to subject end: 57 aas, your sequence is longer than subject: 306 - 66

Fln protein: MKCEGRCENVKLQMGDYQLKTHMFAIHMGGCDIVLGAEWLRTLGPITMDFQELYMSFKQNNCTHTLRGLQAGAPSIISSHRMEKLLKKGHHGVVAQFNAIQVVDTMSSPIHPEMQQIVNKHRPVFDKPHELPPSRGEHDHSITLVPGAQPPNVRPYRYPFTQKNEIEKIIKELLEAGVIRPSISPYSSPVVMVLKKDGERRMCPNFRALNKLTVKDKFPIPVVDDLLDELNGAQFFTKLDLRSGYHQICMKEVDIPKTAFRTHEGHYEFLVMPFGLCNAPSTFQSLMNHILKPYLRKFVLVFFDDI

Protein Length: 307

Fln nts: GAAGAAAGCAAGGACTATGTTACTACTGTGATGAAAAATACTCCCCAGGTCATAAATGCAAGGAGCCCAAATTTTTTCAAATAGATGCCACTGACTACAGCTCAACAGAGGAAGATCCACCACTTGAGGAACATGAGGCGCTAGAAGAAGACAACCAAAAGGACAATGTCTCTGACGAACCAGTTATTTCGCTGCATGCTTTGGCAGGGATTTCTTCACCTCAAACTCTCAAAATCAGAGGTTTTATTAAACATCGCCCAGTAGTAGTCTTGATTGATAGTGGAAGTACACATAATTTCATCCATCAAAAAGTCGCGGAAGCAGTGCATTGTTTTGTACGAGCAGTTTCTAACTTCCAAGTCCAAATTGCGGATGGGGGCACA_-_ATGAAATGTGAAGGCCGCTGTGAAAATGTCAAACTTCAAATGGGGGATTATCAGTTGAAAACCCACATGTTTGCCATACACATGGGGGGATGCGACATTGTCCTCGGCGCTGAATGGCTCCGCACTCTTGGGCCAATCACAATGGATTTCCAGGAGTTATATATGAGTTTTAAGCAGAACAACTGCACACATACCCTCCGTGGGCTCCAGGCGGGAGCCCCCTCTATCATCAGCTCGCATCGGATGGAAAAATTGTTAAAAAAGGGCCATCATGGAGTAGTAGCTCAATTTAATGCCATCCAGGTAGTAGATACCATGTCTTCGCCAATTCATCCTGAGATGCAACAGATTGTGAATAAACATCGGCCGGTCTTTGACAAGCCTCATGAGCTTCCACCATCACGAGGGGAACATGATCATAGCATCACATTGGTTCCAGGGGCCCAACCCCCAAATGTGCGGCCATACAGATATCCATTCACCCAAAAGAATGAAATAGAAAAAATAATCAAGGAACTTTTGGAAGCAGGTGTCATTCGTCCCAGCATTAGTCCTTATTCATCCCCAGTGGTCATGGTGCTCAAGAAAGACGGAGAGAGGCGGATGTGTCCCAACTTCAGGGCCCTCAATAAGTTGACAGTCAAAGATAAATTTCCCATTCCGGTGGTTGACGATTTGCTGGACGAACTCAATGGGGCTCAATTCTTCACTAAATTGGATCTTCGCTCAGGCTACCACCAAATTTGCATGAAGGAAGTTGACATTCCCAAGACTGCTTTCCGAACTCATGAAGGCCATTATGAGTTCCTGGTCATGCCATTTGGTCTTTGTAATGCCCCTTCTACTTTTCAGAGCCTTATGAATCACATTCTTAAGCCATATCTCCGGAAATTTGTCCTCGTCTTCTTCGATGACATCCT

Fln Alignment:

CL1234Contig1___YSSPVVMVLKKDGERRMCPNFRALNKLTVKDKFPIPVVDDLLDELNGAQFFTKLDLRSGYHQI
A9NWN2_______________YSTPIILVRINDGSYILCNNCRVLNEITIKDKFHISIVDELLDELYGTMYFLELDQKSNYYHI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain