SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene40592

Length: 1914 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene40592

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L21 n=9 Tax=Poaceae RepID=Q9AV87_ORYSJ	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L21e	IPR001147	-	0.0	-
Sma3	Ribosomal protein L21e, conserved site	IPR018259	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G57860.1	Translation protein SH3-like family protein chr1:21430034-21430827 REVERSE LENGTH=164	80%
RefSeq	Arabidopsis thaliana	NP_564726.1	60S ribosomal protein L21-2 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002304624.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK51

Fln msg:

Fln protein: MPAGHGVRARTRDLFARPFRKKGYPPISTYLRTFKIGQYVDIKVNGSIHKGMPHKFYHGRTGVVWNVTKRAIGVEMNKEVRNKIIKKRIHVRIEHVQPSRCAEDSLSRRKNNDRLKAEAKARGEPPLSTKRQPEGPKPGFLVEGAVLETVTPIPYDVVNDLKGGY*

Protein Length: 167

Fln nts: CTTCCATTTTTAAGCTTTTTCAACTAACATTATATGAAGAAATCATACAGCTTTTTAACCAATATTTTATGAAGAAACCTTTGTATAGGAATGGATGTATTCGCACTATAATTAAAGATGCCTTTCATGTGTTTGCGAGGACCTGCCATTAACCACTCCATGACTTCACAAAATCAGACACAACGTACTCTTTAGCGAGCTTTTACACTTTTTTGAAGACTCAACACTCACAGCAGAGAAGTCAGGAAGAGCAACTTCCTTAATCAAAATGCTAAGCTAAAGATAACAGGCAACATAAAAGCACTAAAAGCTTGTCTTTATTTATAAGGCACCAGACAATGGAAACCTTGCACAGTAGATTTCTTTTACAAAAAGATACAATATGCAACATGTAAGAAGCTGATAAAGTTCAAGTGATCTCATTTGCCACAAAAGAGAAGGAAATCTAAGGGCACTTGGTCTGGTTGTTGTGGGTTTTCCAGTCAGTGTAGCAGGAGCCACAGACCTCTCTGTTTCCACTTTGACCAGGTGGAACACACTTGCATCGTGCACAGCACGTCCCACAAGCTCTCATACACAGATTAGGTCGGCTGTGCAGCTTGCATCTTTCTCCACATCCTGTTTTGCAGTTTATTGGTGGAGCTGGAGCGCCCGTTTTGGGGGCAGGGGCACGAACTGGTGGAGCAGCAGCACCCACTAGTGGGGCAGGAGCAGCTATTTTGGGGGCCTCCTTGATCTCGTTGTCAGTCCCAAGACAAACCTGAGCTATTGCCAGCAAGAGAACCACGGCTAATAATAGCCTCTTTGAATCACTGAACATGGCAGCCATATTGAGAAGTGGCGAGGGAAACAAGGAACCCGTTGCTCTTGACGCACAGATATTGCAGAGCCAACAAGCTGAGTGAGAGAAGAGGCAGCTCATTACTCCCCCGCGTACTCTGCGTTGATACCACTGCTATATCTATCTTAAAATCCACGGAACCCTAACGCTGAAAGTTAGGGGTTTATACTGAAAAACCCTACACAGGAAGAAAGTCTCTACAGAGGGAAGAGACA_-_ATGCCGGCAGGCCATGGAGTGCGTGCTCGGACGAGGGATCTGTTCGCCAGGCCCTTCAGGAAGAAGGGATATCCCCCGATCAGCACATATCTGAGGACCTTCAAGATAGGTCAGTACGTGGACATTAAGGTCAATGGTTCGATTCACAAAGGGATGCCTCACAAGTTCTACCATGGCCGCACGGGCGTTGTCTGGAACGTCACCAAGCGAGCCATCGGCGTGGAAATGAACAAAGAGGTTCGCAACAAGATTATCAAGAAGAGAATTCATGTACGAATTGAGCATGTGCAACCGTCTAGGTGCGCAGAGGATTCCTTGTCAAGAAGAAAAAACAATGACCGATTGAAAGCAGAGGCTAAAGCACGTGGTGAGCCTCCTCTCAGTACCAAGAGGCAGCCTGAAGGCCCTAAGCCAGGATTTCTTGTTGAGGGTGCTGTTTTGGAGACAGTCACACCTATTCCATATGATGTTGTTAATGATTTGAAGGGTGGATATTAA___GATTTTAGAAGAGTAATTTGCTCTGGTTGTTTCATGGGAAGGATGACCATCTCCTTCTGAAAGTTATTAGGATTTTACCTCAACAGATTTTTATTTTTTTTTGATATATGGACTATATATGTATCAGTTCCTTTGTATTGCCAACCTATATATATGGTTGTCTTTTATTGGTATGTTAGTGCTTAACTACCAGTTTTTAGGATCTCTGGACATGGATCCAAAATAAGGGTTTGGTGGACCTTTTATAAGTGGCTTGACATAATCCCGACGGAATTTGCTTGAATGGTAAAGAGTGTTTAGGAGGCTCACCAGTTCTTTGGCTTATTAATGAGTTTGATTTACGTAAGATGCAAGCGTGCT

Fln Alignment:

CL992Contig1___MPAGHGVRARTRDLFARPFRKKGYPPISTYLRTFKIGQYVDIKVNGSIHKGMPHKFYHGRTGVVWNVTKRAIGVEMNKEVRNKIIKKRIHVRIEHVQPSRCAEDSLSRRKNNDRLKAEAKARGEPPLSTKRQPEGPKPGFLVEGAVLETVTPIPYDVVNDLKGGY
A9NK51_______________MPAGHGVRARTRDLFARPFRKKGYAPISTYLRTFKIGQYVDIKVNGSIHKGMPHKFYHGRTGVVWNVTKRAIGVEMNKQVRNKIIKKRIHVRIEHVQPSRCAQDALLRRKNNDQLKAEAKARGEPPISTKRQPEGPKPGFMVEGAVLETVTPIPYDVVNDLKGGY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain