SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene40497

Length: 2451 nt

UniGene Fasta

>sp_v3.0_unigene40497
CTGCGCCTCACTGTGCCTTTGTTCATCTGGGTCACTGGGTTTCATAGTCATAATAATACCGGATGCTCGGGTTGTAGTCCCCAGTGTTGTCTTCACCTCCTTGCAGGCTTGCTCTGCTTATCCTCACTTCGCTTTTGTTCATCTGGGCAGAGTGGTGTATAGAGATCTTCTTCGTTGATGGAGAACAAAATGGGTTCAGGATGGTGTTTGTTGCTGTTTGTCGTGGTTCTGTACAGATGTGCCGAGGCCAGTAAGTATCTTAAATACAAGGATCCATCTCAGCCCATCAATGCTCGTGTGGAGGACTTGCTGGCGCGGATGACTCTGGCAGAGAAGATTGGACAGATGACCCAGATTGAAAGATCAGTCGCCACTGCAGACGTTATGAAAAATTACTACATTGGGAGTGTACTGAGCGGAGGAGGGAGCGTGCCTGCACCTCAAGCATCTCCGGCTACATGGACTAACTTGGTCGATGGGCTCCAGAAGGGTGCCATGTCTACTCGTCTTCAGATCCCGATGATATATGGCATTGATGCTGTGCATGGCCACAACAATGTGTATGGGGCCACCATCTTCCCTCACAATATTGGGCTTGGAGCTACCAGAGATCCTGATTTGGCTAGAAGAATAGGAGCTGCTACAGCTCTGGAAGTTCGAGCTACTGGCATTCAATACGCATTTGCTCCATGTGTTGCTGTTTGCAGAGATCCTCGATGGGGGCGCTGCTATGAGAGCTACAGCGAGGATCCAAAAATTGTCAAGGCCATGACAGAAATTATCTTTGGTCTGCAGGGGCAGCCTCCTGCCAATTCCACGAAGGGGGTGCCCTTTATAGCTGGACAGTCAAATGTTGCAGCCTGTGCTAAGCACTTTGTGGGTGATGGCGGAACAACCGAGGGTATCAATGAGAATAACACTGTCATCAGTTATAAAGGATTAGTAAACATCCACATGGCCCCCTATTTTGATGCCATTGCCAAAGGAGTCTCCACCATTATGATTTCTTATTCCAGTTGGAATGGACAGAAGATGCATGCTAACCATTTTCTCGTTTCTCATGTTCTAAAGAAGCAACTTGGCTTCAAGGGCTTTGTTATTTCAGATTGGCAAGGTATTGACAGAATAACTAGCCCAGCTGGTGCTAATTACTCTTTGTCAGTCTTTGACGGTGTGAGTGCAGGGATTGACATGGTGATGGTTCCCTACAATTTCACAGACTTTATTAGCGATCTGACTTCGCAAGTCAAGAGTGGTTTCATCTCCATGACCAGAATAAATGATGCAGTTCAAAGAATTTTGAGAGTAAAATTCACCATGGGACTCTTTGAACATCCTATGGCTAATCCAAGCCTAGCCAACCAACTTGGCAGCAAGGAGCACAGGGAGTTGGCAAGGGAAGCTGTTAGGAAATCTCTGGTGTTGTTGAAAAATGGAAAGTCAGCCAGCAAGCCTTTGCTTCCTTTGGATAAGAATGCTCCCAAGATTCTTGTTGCAGGGACTCATCCTGACAATCTGGGTTATCAGTGTGGTGGATGGACAATAGAATGGCAAGGATTAAGTGGAAACTCAACCATAGGAACTACAATTCTTGAAGCAATCAAATTTGCTGTCAGCCCCTCTACTGACGTGGTTTATCAGCAAAATCCAGATGCAAATTACGTCAAAGGACAAGGATTTTCATATGCCATTGTGGTTGTAGGTGAGGCACCATACGCAGAAACGAAGGGGGACAACCTTAATTTGACAATTCCCCTAGGCGGAGGGGACACGATTAAGAACGTCTGTGGCTCCTTAAAATGCCTTGTAATCTTGATATCTGGAAGGCCACTTGTTATTGAACCTTACCTTCCATTGGTGGATGCTTTTGTTGCGGCATGGCTTCCTGGCACTGAGGGCCAAGGTGTGACAGATGTGATTTTCGGAGATCATGGATTTCAAGGGAAGCTGCCAAGAACATGGTTCAAGAGTGTTGATCAATTGCCTATGAACGTAGGGGACAAGCACTATGATCCCCTGTTTCCCTTGGGTTTCGGATTGACCTGAAGATGGGCGACAAGCACCATGATCACCTGTTTCCCTTGGATTCTGAATTGACCACAACATCGGAGATGAAAACCAAAAGCACCAATTTACCATGACCCATCGATTAACCAAAACAATAACTGAAAATCCAACCAAAAGTAATCTACCAAAATAACTTAGCAAAAAAAATAAACGCATAAGCTACCAAATTATGCCGAGTTGTAACAGATGTTACAGGGAAGTTGCCAAGAAAATGGTTCAAGAGTGTTGATCAATTGCATATGAATGTATGGGACAAGCACACTATGATCCCCTGTTTCCTTTGGGTTTCGACTGACCACCACAGTAGCTGAAAATCAAGAAAATCAAGAGTAATTTAGGCTTGCCCATTTCTTATTTAAATGAATGAATGAATTTTGTAGCAAA

Ace file of the UniGene sp_v3.0_unigene40497

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Hydrolase, hydrolyzing O-glycosyl compounds, putative n=1 Tax=Ricinus communis RepID=B9SD66_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	0.0	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	0.0	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G20950.1	Glycosyl hydrolase family protein chr5:7107609-7110775 REVERSE LENGTH=624	70%
RefSeq	Arabidopsis thaliana	NP_197595.2	Glycosyl hydrolase family protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002319151.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUD1

Fln msg:

Fln protein: MENKMGSGWCLLLFVVVLYRCAEASKYLKYKDPSQPINARVEDLLARMTLAEKIGQMTQIERSVATADVMKNYYIGSVLSGGGSVPAPQASPATWTNLVDGLQKGAMSTRLQIPMIYGIDAVHGHNNVYGATIFPHNIGLGATRDPDLARRIGAATALEVRATGIQYAFAPCVAVCRDPRWGRCYESYSEDPKIVKAMTEIIFGLQGQPPANSTKGVPFIAGQSNVAACAKHFVGDGGTTEGINENNTVISYKGLVNIHMAPYFDAIAKGVSTIMISYSSWNGQKMHANHFLVSHVLKKQLGFKGFVISDWQGIDRITSPAGANYSLSVFDGVSAGIDMVMVPYNFTDFISDLTSQVKSGFISMTRINDAVQRILRVKFTMGLFEHPMANPSLANQLGSKEHRELAREAVRKSLVLLKNGKSASKPLLPLDKNAPKILVAGTHPDNLGYQCGGWTIEWQGLSGNSTIGTTILEAIKFAVSPSTDVVYQQNPDANYVKGQGFSYAIVVVGEAPYAETKGDNLNLTIPLGGGDTIKNVCGSLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTEGQGVTDVIFGDHGFQGKLPRTWFKSVDQLPMNVGDKHYDPLFPLGFGLT*

Protein Length: 624

Fln nts: CTGCGCCTCACTGTGCCTTTGTTCATCTGGGTCACTGGGTTTCATAGTCATAATAATACCGGATGCTCGGGTTGTAGTCCCCAGTGTTGTCTTCACCTCCTTGCAGGCTTGCTCTGCTTATCCTCACTTCGCTTTTGTTCATCTGGGCAGAGTGGTGTATAGAGATCTTCTTCGTTG_-_ATGGAGAACAAAATGGGTTCAGGATGGTGTTTGTTGCTGTTTGTCGTGGTTCTGTACAGATGTGCCGAGGCCAGTAAGTATCTTAAATACAAGGATCCATCTCAGCCCATCAATGCTCGTGTGGAGGACTTGCTGGCGCGGATGACTCTGGCAGAGAAGATTGGACAGATGACCCAGATTGAAAGATCAGTCGCCACTGCAGACGTTATGAAAAATTACTACATTGGGAGTGTACTGAGCGGAGGAGGGAGCGTGCCTGCACCTCAAGCATCTCCGGCTACATGGACTAACTTGGTCGATGGGCTCCAGAAGGGTGCCATGTCTACTCGTCTTCAGATCCCGATGATATATGGCATTGATGCTGTGCATGGCCACAACAATGTGTATGGGGCCACCATCTTCCCTCACAATATTGGGCTTGGAGCTACCAGAGATCCTGATTTGGCTAGAAGAATAGGAGCTGCTACAGCTCTGGAAGTTCGAGCTACTGGCATTCAATACGCATTTGCTCCATGTGTTGCTGTTTGCAGAGATCCTCGATGGGGGCGCTGCTATGAGAGCTACAGCGAGGATCCAAAAATTGTCAAGGCCATGACAGAAATTATCTTTGGTCTGCAGGGGCAGCCTCCTGCCAATTCCACGAAGGGGGTGCCCTTTATAGCTGGACAGTCAAATGTTGCAGCCTGTGCTAAGCACTTTGTGGGTGATGGCGGAACAACCGAGGGTATCAATGAGAATAACACTGTCATCAGTTATAAAGGATTAGTAAACATCCACATGGCCCCCTATTTTGATGCCATTGCCAAAGGAGTCTCCACCATTATGATTTCTTATTCCAGTTGGAATGGACAGAAGATGCATGCTAACCATTTTCTCGTTTCTCATGTTCTAAAGAAGCAACTTGGCTTCAAGGGCTTTGTTATTTCAGATTGGCAAGGTATTGACAGAATAACTAGCCCAGCTGGTGCTAATTACTCTTTGTCAGTCTTTGACGGTGTGAGTGCAGGGATTGACATGGTGATGGTTCCCTACAATTTCACAGACTTTATTAGCGATCTGACTTCGCAAGTCAAGAGTGGTTTCATCTCCATGACCAGAATAAATGATGCAGTTCAAAGAATTTTGAGAGTAAAATTCACCATGGGACTCTTTGAACATCCTATGGCTAATCCAAGCCTAGCCAACCAACTTGGCAGCAAGGAGCACAGGGAGTTGGCAAGGGAAGCTGTTAGGAAATCTCTGGTGTTGTTGAAAAATGGAAAGTCAGCCAGCAAGCCTTTGCTTCCTTTGGATAAGAATGCTCCCAAGATTCTTGTTGCAGGGACTCATCCTGACAATCTGGGTTATCAGTGTGGTGGATGGACAATAGAATGGCAAGGATTAAGTGGAAACTCAACCATAGGAACTACAATTCTTGAAGCAATCAAATTTGCTGTCAGCCCCTCTACTGACGTGGTTTATCAGCAAAATCCAGATGCAAATTACGTCAAAGGACAAGGATTTTCATATGCCATTGTGGTTGTAGGTGAGGCACCATACGCAGAAACGAAGGGGGACAACCTTAATTTGACAATTCCCCTAGGCGGAGGGGACACGATTAAGAACGTCTGTGGCTCCTTAAAATGCCTTGTAATCTTGATATCTGGAAGGCCACTTGTTATTGAACCTTACCTTCCATTGGTGGATGCTTTTGTTGCGGCATGGCTTCCTGGCACTGAGGGCCAAGGTGTGACAGATGTGATTTTCGGAGATCATGGATTTCAAGGGAAGCTGCCAAGAACATGGTTCAAGAGTGTTGATCAATTGCCTATGAACGTAGGGGACAAGCACTATGATCCCCTGTTTCCCTTGGGTTTCGGATTGACCTGA___AGATGGGCGACAAGCACCATGATCACCTGTTTCCCTTGGATTCTGAATTGACCACAACATCGGAGATGAAAACCAAAAGCACCAATTTACCATGACCCATCGATTAACCAAAACAATAACTGAAAATCCAACCAAAAGTAATCTACCAAAATAACTTAGCAAAAAAAATAAACGCATAAGCTACCAAATTATGCCGAGTTGTAACAGATGTTACAGGGAAGTTGCCAAGAAAATGGTTCAAGAGTGTTGATCAATTGCATATGAATGTATGGGACAAGCACACTATGATCCCCTGTTTCCTTTGGGTTTCGACTGACCACCACAGTAGCTGAAAATCAAGAAAATCAAGAGTAATTTAGGCTTGCCCATTTCTTATTTAAATGAATGAATGAATTTTGTAGCAAA

Fln Alignment:

CL118Contig1___MENKMGSGWCLLLFVVVLYRCAEASKYLKYKDPSQPINARVEDLLARMTLAEKIGQMTQIERSVATADVMKNYYIGSVLSGGGSVPAPQASPATWTNLVDGLQKGAMSTRLQIPMIYGIDAVHGHNNVYGATIFPHNIGLGATRDPDLARRIGAATALEVRATGIQYAFAPCVAVCRDPRWGRCYESYSEDPKIVKAMTEIIFGLQGQPPANSTKGVPFIAGQSNVAACAKHFVGDGGTTEGINENNTVISYKGLVNIHMAPYFDAIAKGVSTIMISYSSWNGQKMHANHFLVSHVLKKQLGFKGFVISDWQGIDRITSPAGANYSLSVFDGVSAGIDMVMVPYNFTDFISDLTSQVKSGFISMTRINDAVQRILRVKFTMGLFEHPMANPSLANQLGSKEHRELAREAVRKSLVLLKNGKSASKPLLPLDKNAPKILVAGTHPDNLGYQCGGWTIEWQGLSGNSTIGTTILEAIKFAVSPSTDVVYQQNPDANYVKGQGFSYAIVVVGEAPYAETKGDNLNLTIPLGGGDTIKNVCGSLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTEGQGVTDVIFGDHGFQGKLPRTWFKSVDQLPMNVGDKHYDPLFPLGFGLT
A9NUD1_______________MASRMNSGWYLLLSVVVLCKCAGAIGYAKYKDPSQPIIARVEDLLARMTVEEKIGQMTQIERSDATADVMKKYYIGSVLSGGGSVPAPKASPATWINMVDDLQKGAMSTRLQIPMMYGIDAVHGHNNAYGATMFPHNIGLGATRDPDLARRIGAATALEVRATGIQYTFAPCVAVCRDPRWGRCYESYSEDPKIVKAMTQIIFGLQGQPPANSTKGVPFIAGQSNVAACAKHFVGDGGTTNGIDENNTVIDYKGLVNIHMTPYFDAIAKGVSTIMVSYSSWNGMKMHANRFLVSEVLKKQLGFKGFVISDWQGIDRITSPPGANYSLSVFDGVGAGIDMVMVPENFTNFITELTSQVKGGLISMTRINDAVRRILTVKFTMGLFEYPMADPSLANHFGSKEHRELAREAVRKSLVLLKNGKSAGKPLLPLDKNAPKILVAGTHPNNLGYQCGGWTIEWQGLSGNSTIGTTILQAIKFAVSPSTEVIYQQNPDANYVKGQGFSYAIVVVGEAPYAEMNGDNLNLTIPLGGGDTIKNVCSSLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTEGQGVTDVIFGDYGFQGKLPRTWFKSVDQLPMNVGDKHYDPSFPLGFGLT

SSRs (tot: 1)

Start position	End position	Sequence	Length
2426	2440	AATG AATG AATG AAT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain