SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene40490

Length: 461 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene40490
TCTAGCTCCGGTAAAGAGCTCTTTCCAGACATTCTTGGGGAGGCCATGGAAACATTACTCTCGCACGGTTTATATGAAATCATATATGGATGATGTCGTCGATCCTGCAGGTTGGCTAGAATGGTCGGGGGACTTTGGCTTGACCACGCTGTATTATGGCGAATATATGAATTCGGGACCAGGGGCAGGAACTGCAGGGCGAGTTCAATGGCCTGGCTATCATACTATGAACATTTCTGATGCTCAAAATTTCACTGTGGTTAATTTCATCGCTGGTGATGCCTGGATACAGGCAGTACCCTTCAATACAGGCCTAGATTAAAAAACAAAAGTGACAGAAAAGAGAAGGCTAAAGAGTCAGTATATATTCTTTTGTGTATTCGTGTCATTTACATAATTGTTTCGCCAAACCCCTTAATTACATTTATTCATTGCTAATGTAAGTGTAGCATTCGATTACA

Ace file of the UniGene sp_v3.0_unigene40490 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pectinesterase (Fragment) n=1 Tax=Musa acuminata AAA Group RepID=C4N552_MUSAC	-	-	1.0e-35	63%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Pectinesterase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectinesterase.	EC:3.1.1.11	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pentose and glucuronate interconversions	00040	%
Sma3	Starch and sucrose metabolism	00500	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	ARATH1; ARATH12; ARATH13; ARATH16; ARATH17; ARATH20; ARATH21; ARATH22; ARATH23; ARATH24; ARATH25; ARATH27; ARATH32; ARATH34; ARATH35; ARATH36; ARATH39; ARATH4; ARATH40; ARATH41; ARATH44; ARATH45; ARATH46; ARATH47; ARATH58; ARATH59; ARATH6; ARATH60; ARATH6

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	aspartyl esterase activity	GO:0045330	Molecular Function	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	cell wall modification	GO:0042545	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Carbohydrate-binding/sugar hydrolysis domain	IPR006633	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02330.1	ATPMEPCRB Plant invertase/pectin methylesterase inhibitor superfamily chr4:1032479-1034928 FORWARD LENGTH=573	1.0e-39	60%
RefSeq	Arabidopsis thaliana	NP_566379.1	pectinesterase 25 [Arabidopsis thaliana]	9.99995e-41	58%
RefSeq	Populus trichocarpa	XP_002318285.1	predicted protein [Populus trichocarpa]	1.99965e-42	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVV0

Fln msg: your sequence is shorter than subject: 107 - 557

Fln protein: LAPVKSSFQTFLGRPWKHYSRTVYMKSYMDDVVDPAGWLEWSGDFGLTTLYYGEYMNSGPGAGTAGRVQWPGYHTMNISDAQNFTVVNFIAGDAWIQAVPFNTGLD*

Protein Length: 108

Fln nts: TCTAGCTCCGGTAAAGAGCTCTTTCCAGACATTCTTGGGGAGGCCATGGAAACATTACTCTCGCACGGTTTATATGAAATCATATATGGATGATGTCGTCGATCCTGCAGGTTGGCTAGAATGGTCGGGGGACTTTGGCTTGACCACGCTGTATTATGGCGAATATATGAATTCGGGACCAGGGGCAGGAACTGCAGGGCGAGTTCAATGGCCTGGCTATCATACTATGAACATTTCTGATGCTCAAAATTTCACTGTGGTTAATTTCATCGCTGGTGATGCCTGGATACAGGCAGTACCCTTCAATACAGGCCTAGATTAA___AAAACAAAAGTGACAGAAAAGAGAAGGCTAAAGAGTCAGTATATATTCTTTTGTGTATTCGTGTCATTTACATAATTGTTTCGCCAAACCCCTTAATTACATTTATTCATTGCTAATGTAAGTGTAGCATTCGATTACA

Fln Alignment:

CL86Contig2___LAPVKSSFQTFLGRPWKHYSRTVYMKSYMDDVVDPAGWLEWSGDFGLTTLYYGEYMNSGPGAGTAGRVQWPGYHTM-NISDAQNFTVVNFIAGDAWIQA
A9NVV0_______________LVPVKSSFPTYLGRPWKEYSRTVFMQSYIDGFIQPAGWLEWDGDFALKTLYYGEYMNTGPGSGTGNRVKWPGYRVIKSPQEASKFTVGEFIQGDSWLQS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain