SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene40300

Length: 236 nt

UniGene Fasta

>sp_v3.0_unigene40300
TCAGCTGGCATTTCATTTTGCATGGCACTTACTTCCCTGTGCAGTATTGTTGCATTCCAGGCTATGGTCTCAATTGCAACAATTGGTTTGTACATTGCATACGCTCTGCCTATTCTGTGCCGTATCACTCTTGCACGCAGAACTTTTGTAAAAGGTCCTTTTAACCTCGGTAGTTTCAGCTTATTCATTGGTTGGATTGCTGTTTTATGGGTTGCCACCATCACTGTCCTATTTTC

Ace file of the UniGene sp_v3.0_unigene40300

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative amino acid or GABA permease [Arabidopsis thaliana]	-	-	3.0e-27	76%
FL-Next	sp=Amino-acid permease BAT1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	76%
Sma3	Putative GABA-specific permease	-	-	1.205e-20	-

Source	Gene names
Sma3	At2g01170; GSVIVT00030415001; Os01g0607200; Os01g0945100; Os01g0945200; Os01g0945300; Os01g0945600; Os01g0945700; OsI_02790; OsI_05157; OsI_05158; OsI_05159; OsJ_02547; OsJ_04734; OsJ_04735; OsJ_04736; OsJ_04737; OsJ_04742; P0614D08.26; P0614D08.27; P0614

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	amino acid transport	GO:0006865	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Amino acid permease subfamily	IPR004756	-	-
Sma3	Amino acid permease, conserved site	IPR004840	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G01170.1	BAT1 bidirectional amino acid transporter 1 chr2:102364-104462 REVERSE LENGTH=516	1.0e-34	76%
RefSeq	Arabidopsis thaliana	NP_973387.1	bidirectional amino acid transporter 1 [Arabidopsis thaliana]	1.0e-34	76%
RefSeq	Populus trichocarpa	XP_002315914.1	amino acid transporter [Populus trichocarpa]	1.0e-33	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZU50

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 78 - 516

Fln protein: SAGISFCMALTSLCSIVAFQAMVSIATIGLYIAYALPILCRITLARRTFVKGPFNLGSFSLFIGWIAVLWVATITVLF

Protein Length: 79

Fln nts: TCAGCTGGCATTTCATTTTGCATGGCACTTACTTCCCTGTGCAGTATTGTTGCATTCCAGGCTATGGTCTCAATTGCAACAATTGGTTTGTACATTGCATACGCTCTGCCTATTCTGTGCCGTATCACTCTTGCACGCAGAACTTTTGTAAAAGGTCCTTTTAACCTCGGTAGTTTCAGCTTATTCATTGGTTGGATTGCTGTTTTATGGGTTGCCACCATCACTGTCCTATTTTC

Fln Alignment:

CL21323Contig1___SAGISFCMALTSLCSIVAFQAMVSIATIGLYIAYALPILCRITLARRTFVKGPFNLGSFSLFIGWIAVLWVATITVLF
Q9ZU50_______________SALISFCMALTSLGSIVAFQAMVSIATIGLYIAYAIPIILRVTLARNTFVPGPFSLGKYGMVVGWVAVLWVVTISVLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain