SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene39876

Length: 189 nt

UniGene Fasta

>sp_v3.0_unigene39876
ATGCTGTTTGGAAGCATTCGAACCGTTTCCTCCTTTTCTGCCTCTACAATGAGCCTTTACAATGAAAAATGTTCTGCCTCCTTGACGGGGACGGCATTATGTTGTTCTTTCATGGCAAGAAGGACCGGGATTTCTGCCTTGTCTCTGAGACCAATTTACATATCAATGGGCATTTCATTGGGAAGAGCA

Ace file of the UniGene sp_v3.0_unigene39876

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Structural constituent of cell wall, putative	-	-	4.179e-08	-

Source	Gene names
Sma3	EMB7; GSVIVT00015528001; GSVIVT00022037001; GSVIVT00034924001; LEA1; POPTRDRAFT_200309; POPTRDRAFT_201841; RCOM_0811660; RCOM_0811870; RCOM_0811880; RCOM_0886440; VITISV_019337; VITISV_031841;

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Root cap	IPR009646	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19430.1	late embryogenesis abundant protein-related / LEA protein-related chr3:6736382-6738330 REVERSE LENGTH=559	8.0e-12	65%
RefSeq	Arabidopsis thaliana	NP_188574.2	late embryogenesis abundant protein-like protein [Arabidopsis thaliana]	1.0e-11	65%
RefSeq	Populus trichocarpa	XP_002313866.1	predicted protein, partial [Populus trichocarpa]	2.0e-14	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSR1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 208 aas, your sequence is shorter than subject: 62 - 319

Fln protein: AVWKHSNRFLLFCLYNEPLQ*KMFCLLDGDGIMLFFHGKKDRDFCLVSETNLHINGHFIGKS

Protein Length: 63

Fln nts: ATGCTGTTTGGAAGCATTCGAACCGTTTCCTCCTTTTCTGCCTCTACAATGAGCCTTTACAATGAAAAATGTTCTGCCTCCTTGACGGGGACGGCATTATGTTGTTCTTTCATGGCAAGAAGGACCGGGATTTCTGCCTTGTCTCTGAGACCAATTTACATATCAATGGGCATTTCATTGGGAAGAGCA

Fln Alignment:

CL16241Contig1___LDGDGIMLFFHGKKDRDFCLVSETNLHINGHFIGKS
A9NSR1_______________IGGDGIMFYFHGKKDRDFCLVSETNLHINGHFIGKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain