SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene39727

Length: 226 nt

UniGene Fasta

>sp_v3.0_unigene39727
TCCTTTCTATCCCATGCGACCATGAATTTGGTTGTACAGGGCACGAGAGGGACTTTACATGTGGAGGACTTATGCATTCCATTTGAAGAGACAAAGGCATCCTTCAAGTTTATTTCTGACATGAAGCCCAAGCCACTTTTCCTAGGTTGGGAGAATAGGCCAGAGGAGCACGAGGTGATCGCAGAGGTGCCTCAGGAAGTTGCCATGATTGAGGAACTTTCAAGCA

Ace file of the UniGene sp_v3.0_unigene39727

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative oxidoreductase n=2 Tax=Oryza sativa RepID=Q8LNC8_ORYSJ	-	-	3.0e-12	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxidoreductase, N-terminal	IPR000683	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP22

Fln msg: Distance to subject end: 44 aas, your sequence is shorter than subject: 75 - 363

Fln protein: SFLSHATMNLVVQGTRGTLHVEDLCIPFEETKASFKFISDMKPKPLFLGWENRPEEHEVIAEVPQEVAMIEELSS

Protein Length: 76

Fln nts: TCCTTTCTATCCCATGCGACCATGAATTTGGTTGTACAGGGCACGAGAGGGACTTTACATGTGGAGGACTTATGCATTCCATTTGAAGAGACAAAGGCATCCTTCAAGTTTATTTCTGACATGAAGCCCAAGCCACTTTTCCTAGGTTGGGAGAATAGGCCAGAGGAGCACGAGGTGATCGCAGAGGTGCCTCAGGAAGTTGCCATGATTGAGGAACTTTCAAGCA

Fln Alignment:

CL14824Contig1___SFLSHATMNLVVQGTRGTLHVEDLCIPFEETKASFKFISDMKPKPLFLGWENRPEEHEVIAEVPQEVAMIEELS
B8LP22_______________SFLSHATTNLTVQGTRGTLHVEDFCIPFEETNASFKFISDMKPKPLFLGWENRPDEHKVIAEVPQEVAMIEELS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain