SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene39639

Length: 189 nt

UniGene Fasta

>sp_v3.0_unigene39639
CACACGGGGATCTTCAGTCATGCTTAGAAATGGCAAAGGTTGCAGATGTAATAGCATTTGTAGCTTCAGCTGAAGTCTCCAGTGAAGGAGTTATGCACAATCATTATATTGACACCATTGGAGGTCAATGCTTGTCTATGCTTCGAGCTCAGGGTTTGCCAAGTACTGTTGGCTTGGTTATTGATTTGC

Ace file of the UniGene sp_v3.0_unigene39639

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	66%

Source	Gene names
Sma3	At1g42440; GSVIVT00002877001; RCOM_1600880; VITISV_040782;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	ribosome biogenesis	GO:0042254	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosome biogenesis protein BMS1/TSR1, C-terminal	IPR007034	-	0.0	-
Sma3	AARP2CN	IPR012948	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G42440.1	" FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown functi	9.0e-15	58%
RefSeq	Arabidopsis thaliana	NP_564480.1	uncharacterized protein [Arabidopsis thaliana]	1.0e-14	58%
RefSeq	Populus trichocarpa	XP_002307783.1	predicted protein [Populus trichocarpa]	1.0e-13	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BE31

Fln msg: Distance to subject end: 271 aas, your sequence is shorter than subject: 62 - 502

Fln protein: HGDLQSCLEMAKVADVIAFVASAEVSSEGVMHNHYIDTIGGQCLSMLRAQGLPSTVGLVIDL

Protein Length: 63

Fln nts: CACACGGGGATCTTCAGTCATGCTTAGAAATGGCAAAGGTTGCAGATGTAATAGCATTTGTAGCTTCAGCTGAAGTCTCCAGTGAAGGAGTTATGCACAATCATTATATTGACACCATTGGAGGTCAATGCTTGTCTATGCTTCGAGCTCAGGGTTTGCCAAGTACTGTTGGCTTGGTTATTGATTTGC

Fln Alignment:

CL13916Contig1___HGDLQSCLEMAKVADVIAFVASAEVSSEGVMHNHYIDTIGGQCLSMLRAQGLPSTVGLVIDL
A5BE31_______________HGDLSSCIEMVKVADLIAFVASASCSCEEGTSNYYIDSFGTQCLSVFRALGLPSTVVLIRDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain