SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene39411

Length: 220 nt

UniGene Fasta

>sp_v3.0_unigene39411
TAAGTCTGAGCTCCTGATACAGGCTGCTGTGAACTGTATTTTGCCAAAAGAGTGGAAAGGTGTGAGATATGGGGGGTCTGAGGGTGTCGTCATGTTATTTGACTTAGATTGCCGATTTGATATATTGCGTCTTTCCCATTGTCTATGTTGTCGAATTCATGGGGCTTGTGAACATCATGGACCACACTACAGTGGGTATTCAGAAACCAACAATAGGCCA

Ace file of the UniGene sp_v3.0_unigene39411

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA repair protein XRCC2-like protein [Arabidopsis thaliana] gb\|AED97910.1\| DNA repair protein XRCC2-like protein [Arabidopsis thaliana]	-	-	5.0e-11	57%
FL-Next	Isoform 2 of DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana GN=XRCC2	-	-	0.0	57%

Source	Gene names
Sma3	GSVIVT00019230001; OsI_04592; OsJ_04232;

Source	InterPros	Term	Type	e value	Identity
Sma3	GPI transamidase subunit PIG-U	IPR009600	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64520.1	XRCC2, ATXRCC2 homolog of X-ray repair cross complementing 2 (XRCC2) chr5:25788069-25790204 FORWARD LENGTH=372	2.0e-15	57%
RefSeq	Arabidopsis thaliana	NP_001032141.1	DNA repair protein XRCC2-like protein [Arabidopsis thaliana]	1.0e-15	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q682D3-2

Fln msg: Distance to subject end: 167 aas, your sequence is shorter than subject: 73 - 295

Fln protein: KSELLIQAAVNCILPKEWKGVRYGGSEGVVMLFDLDCRFDILRLSHCLCCRIHGACEHHGPHYSGYSETNNRP

Protein Length: 74

Fln nts: TAAGTCTGAGCTCCTGATACAGGCTGCTGTGAACTGTATTTTGCCAAAAGAGTGGAAAGGTGTGAGATATGGGGGGTCTGAGGGTGTCGTCATGTTATTTGACTTAGATTGCCGATTTGATATATTGCGTCTTTCCCATTGTCTATGTTGTCGAATTCATGGGGCTTGTGAACATCATGGACCACACTACAGTGGGTATTCAGAAACCAACAATAGGCCA

Fln Alignment:

CL10726Contig1___KSELLIQAAVNCILPKEWKGVRYGGSEGVVMLFDLDCRFDILRLSHCLCCRI
Q682D3-2_____________KTQILIQAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain