SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene39395

Length: 567 nt

UniGene Fasta

>sp_v3.0_unigene39395
GCATCTTTTATTATCTGGCCACAACTATTCCAAAGGCAAATGAAGGGTCTACATGGGTTGGAAGTTTAAGTTTGGGAGATTACCATTATACTGATTTTAGGGAAATCAGCTTGTCAAGATTGTACATAACCTCTCTGTATTTTGCAATAGCTACAATGGCCACAGTAGGATATGGAGATGTGCATGCAGTCAATTGCAGGGAAATGATATTTGTAATGATATATGTGTCGTTTGATATGATTCTGGGGGCCTATTTGATCGGTAACATGACTGCACTCATTGTTAAAGGATCCAAGACAGAAAGATTTAGGGATAAAATGGCTAATCTCATGAAATACATGAATAGACATAAACTGGACAAGGATATAAGGACTCAAATCAAAGGTCATGTCAGGTTGCAGTATGAGAGTAGTTATGGTGAAGCTAGTGTTTTAGAAGATATTCCAGTTTCTATTAGGGCAAAAGTTTCGGAGTCATTACATATGTCAGAAGTTGCACAGGTTCCTCTTTTCAAGGATTGCAGTGCTGAATTCATAAGCCAGATTGTCACTAGATTAAAGGAAGAGT

Ace file of the UniGene sp_v3.0_unigene39395

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Potassium channel KOR1 n=3 Tax=Oryza sativa RepID=KOR1_ORYSJ	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%

Source	Gene names
Sma3	At3g02850; At5g37500; F13E7.21; GORK; GSVIVT00016959001; GSVIVT00017882001; GSVIVT00031945001; GSVIVT00032933001; MPA22.4; OSIGBa0140O07.2; OSJNBa0027P08.8; OSJNBa0091G06.35; Os04g0445000; Os06g0250600; OsI_16046; OsI_16050; OsI_22386; OsJ_14938; OsJ_2082

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ion channel activity	GO:0005216	Molecular Function	-
Sma3	voltage-gated potassium channel activity	GO:0005249	Molecular Function	-
Sma3	outward rectifier potassium channel activity	GO:0015271	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	ion transport	GO:0006811	Biological Process	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Potassium channel, voltage-dependent, EAG/ELK/ERG	IPR003938	-	-
Sma3	Ion transport	IPR005821	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Ribosomal protein L22/L17, conserved site	IPR018260	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02850.1	SKOR STELAR K+ outward rectifier chr3:619701-623473 REVERSE LENGTH=828	71%
RefSeq	Arabidopsis thaliana	NP_186934.1	Potassium channel SKOR [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002301665.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPV4

Fln msg: Distance to subject end: 232 aas, your sequence is shorter than subject: 188 - 659

Fln protein: IFYYLATTIPKANEGSTWVGSLSLGDYHYTDFREISLSRLYITSLYFAIATMATVGYGDVHAVNCREMIFVMIYVSFDMILGAYLIGNMTALIVKGSKTERFRDKMANLMKYMNRHKLDKDIRTQIKGHVRLQYESSYGEASVLEDIPVSIRAKVSESLHMSEVAQVPLFKDCSAEFISQIVTRLKEE

Protein Length: 189

Fln nts: GCATCTTTTATTATCTGGCCACAACTATTCCAAAGGCAAATGAAGGGTCTACATGGGTTGGAAGTTTAAGTTTGGGAGATTACCATTATACTGATTTTAGGGAAATCAGCTTGTCAAGATTGTACATAACCTCTCTGTATTTTGCAATAGCTACAATGGCCACAGTAGGATATGGAGATGTGCATGCAGTCAATTGCAGGGAAATGATATTTGTAATGATATATGTGTCGTTTGATATGATTCTGGGGGCCTATTTGATCGGTAACATGACTGCACTCATTGTTAAAGGATCCAAGACAGAAAGATTTAGGGATAAAATGGCTAATCTCATGAAATACATGAATAGACATAAACTGGACAAGGATATAAGGACTCAAATCAAAGGTCATGTCAGGTTGCAGTATGAGAGTAGTTATGGTGAAGCTAGTGTTTTAGAAGATATTCCAGTTTCTATTAGGGCAAAAGTTTCGGAGTCATTACATATGTCAGAAGTTGCACAGGTTCCTCTTTTCAAGGATTGCAGTGCTGAATTCATAAGCCAGATTGTCACTAGATTAAAGGAAGAGT

Fln Alignment:

CL10463Contig1___IFYYLATTIPKANEGSTWVGSLSLGDYHYTDFREISLSRLYITSLYFAIATMATVGYGDVHAVNCREMIFVMIYVSFDMILGAYLIGNMTALIVKG-SKTERFRDKMANLMKYMNRHKLDKDIRTQIKGHVRLQYES-SYGEASVLEDIPVSIRAKVSESLHMSEVAQVPLFKDCSAEFISQIVTRLKEE
B8LPV4_______________LYYLLAIWYP--NQNNTWIGS------RVPEFQQKSFWIRYISCIYWSITTLSTVGYGDIHAVNTREMIFIIFYVFFNLGLTAYLIGNMTNLVVQGTSRTMQFRNKIRAASNFGNRNDLPPKLKEQILSYMCLKFRAEELQQQKVMEELPKSIRTSISRCLFIETVETVYLFQGVSTEFILDLVTEMHAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain