SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene39227

Length: 372 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene39227
TGCAGTGGATTCCCTTTCTATCTGCATGAACATCAATGGCTGGGAGATGATGATACCCCTTGGATTCTTTGTTGCAGTTGGAGTGAGGATTGCCAATGAGCTAGGAGCTGGAAATGGCAGGGGAGCCAAATTTGCAATAATTGTCTCTGCAACTACATCAAGTGCAATAGGTGTTGTATTTTGGGTTCTCATTGTGGTATTCCGCCATGATTTTGCTCTGTTGTTCACAAGCAGTTCTGCCATCAGAGACACGGTTTCTAGAATGGCGATTTTGCTGGCGTTTACTATTCTCTTCAACAGTGTTCAGCCAGTACTTTCAGGGGTAGCTGTTGGATCAGGGTGGCAATCTTATGTTGCGTGGATCAACATTGG

Ace file of the UniGene sp_v3.0_unigene39227 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mate efflux domain-containing protein [Arabidopsis thaliana] gb\|AAK53040.1\|AF375456_1 AT5g65380/MNA5_11 [Arabidopsis thaliana] dbj\|BAB11560.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAN28899.1\| At5g65380/MNA5_11 [Arabidopsis thaliana] gb\|AED980	-	-	2.00386e-43	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Multidrug resistance pump, putative	-	-	2.80499e-40	-

Source	Gene names
Sma3	117M18_21; 117M18_23; AT4g25640; At1g11670; At1g12950; At1g33080; At1g33090; At1g33100; At1g33110; At1g47530; At3g21690; At3g26590; At4g00350; At4g25640; At5g10420; At5g38030; At5g44050; At5g65380; DDTFR18; F12B17_230; F16N3.20; F9L11.23; GSVIVT0000946800

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	carbon-sulfur lyase activity	GO:0016846	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Allinase, C-terminal	IPR006948	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65380.1	MATE efflux family protein chr5:26123241-26126352 REVERSE LENGTH=486	69%
RefSeq	Arabidopsis thaliana	NP_201341.1	mate efflux domain-containing protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002310871.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVJ0

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 123 - 503

Fln protein: AVDSLSICMNINGWEMMIPLGFFVAVGVRIANELGAGNGRGAKFAIIVSATTSSAIGVVFWVLIVVFRHDFALLFTSSSAIRDTVSRMAILLAFTILFNSVQPVLSGVAVGSGWQSYVAWINI

Protein Length: 124

Fln nts: TGCAGTGGATTCCCTTTCTATCTGCATGAACATCAATGGCTGGGAGATGATGATACCCCTTGGATTCTTTGTTGCAGTTGGAGTGAGGATTGCCAATGAGCTAGGAGCTGGAAATGGCAGGGGAGCCAAATTTGCAATAATTGTCTCTGCAACTACATCAAGTGCAATAGGTGTTGTATTTTGGGTTCTCATTGTGGTATTCCGCCATGATTTTGCTCTGTTGTTCACAAGCAGTTCTGCCATCAGAGACACGGTTTCTAGAATGGCGATTTTGCTGGCGTTTACTATTCTCTTCAACAGTGTTCAGCCAGTACTTTCAGGGGTAGCTGTTGGATCAGGGTGGCAATCTTATGTTGCGTGGATCAACATTGG

Fln Alignment:

CL8580Contig1___AVDSLSICMNINGWEMMIPLGFFVAVGVRIANELGAGNGRGAKFAIIVSATTSSAIGVVFWVLIVVFRHDFALLFTSSSAIRDTVSRMAILLAFTILFNSVQPVLSGVAVGSGWQSYVAWINI
A9NVJ0_______________ALDSLSICMNINGLEVMIPLAFLAATGVRVANELGSGNGKGAKFAVIVSVTTSCAIGLVFWVLILILRDDFAIIFTDSAVIIKAVSKLAYLLSFTILLNSVQPVLSGVAIGSGWQSIVAYVNI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain