SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene39201

Length: 241 nt

UniGene Fasta

>sp_v3.0_unigene39201
GCTCATTTCAAAAGGAGCGGAAAGGGAAGGGCATTACAAAAGAGCAGTGATGGAGTTATAGATCCTAGAACACTTTTTACTGCTATTTGTGATAAGGTTCCACGCTTCAGAGGATATCGGCAACAGGATAGCCATGAGTTGTTGCGGTTCTTACTTGACTGCCTACATATAGAGGAATTGAATGCAAGAAAAGCTGAAAGTAGAAGTTCTGAGATTTCATCTGGAAAAGGGGATGACAGTA

Ace file of the UniGene sp_v3.0_unigene39201

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin carboxyl-terminal hydrolase 1 [Arabidopsis thaliana] sp\|Q9FPT5.2\|UBP1_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 1; AltName: Full=Deubiquitinating enzyme 1; Short=AtUBP1; AltName: Full=Ubiquitin thiolesterase 1; AltName: Full=Ubiq	-	-	2.0e-08	62%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%

Source	Gene names
Sma3	RCOM_1019320;

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Zinc finger, UBP-type	IPR001607	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G32780.1	UBP1, ATUBP1 ubiquitin-specific protease 1 chr2:13898431-13901870 REVERSE LENGTH=1083	8.0e-12	62%
RefSeq	Arabidopsis thaliana	NP_565753.1	ubiquitin carboxyl-terminal hydrolase 1 [Arabidopsis thaliana]	1.0e-11	62%
RefSeq	Populus trichocarpa	XP_002300170.1	predicted protein [Populus trichocarpa]	3.0e-13	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FPT5

Fln msg: Distance to subject end: 760 aas, your sequence is shorter than subject: 80 - 1083

Fln protein: AHFKRSGKGRALQKSSDGVIDPRTLFTAICDKVPRFRGYRQQDSHELLRFLLDCLHIEELNARKAESRSSEISSGKGDDS

Protein Length: 81

Fln nts: GCTCATTTCAAAAGGAGCGGAAAGGGAAGGGCATTACAAAAGAGCAGTGATGGAGTTATAGATCCTAGAACACTTTTTACTGCTATTTGTGATAAGGTTCCACGCTTCAGAGGATATCGGCAACAGGATAGCCATGAGTTGTTGCGGTTCTTACTTGACTGCCTACATATAGAGGAATTGAATGCAAGAAAAGCTGAAAGTAGAAGTTCTGAGATTTCATCTGGAAAAGGGGATGACAGTA

Fln Alignment:

CL8331Contig1___IDPRTLFTAICDKVPRFRGYRQQDSHELLRFLLDCLHIEELNARK
Q9FPT5_______________INPRDLFFSVCSQAPQFRGYQQHDSHELLRCLLDGLSIEESSLRK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain