SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene39087

Length: 410 nt

UniGene Fasta

>sp_v3.0_unigene39087
GCAGTATGGAAAGAATCTGAAAATGAAATTGAAATACAAAAATGCAGGTATTCACAGAGGATGAAAGATCGTCGCCAGCGTGCAAAGTTACTGCATAAAACAAGGTATGCAAAGAGGAATAAAGATTTAAGCTATTTATATGGTAGAGGTATTGCATGTGTATCAGGGGATTCAGGAATTGGAAAAACCGAGTTAGTACTGGAATTTGCATACAGATATGCACAGAGGTATAGGATGGTATTATGGGTTGGTGGAGAAACTCGTTACCTGAGACAGAACTATTTGAATCTGTCTCGGTTACTTGGGTTGGATGTGAGTAATGAGACACATATTGCCTCAGAGAAAGGTAGGAATAAGACATTTGAGGAGCAGGAAATGGAAGCCTTGCAGAGAGTGAGAAAGGAGCTCAG

Ace file of the UniGene sp_v3.0_unigene39087

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tir-nbs resistance protein n=1 Tax=Populus trichocarpa RepID=B9GWT3_POPTR	-	-	1.0e-36	59%
FL-Next	tr=Tir-nbs resistance protein; subsp. trichocarpa).	-	-	0.0	59%
Sma3	Nucleoside-triphosphatase, putative	-	-	3.506e-09	-

Source	Gene names
Sma3	6J23.20; AT4g23440; At4g23440; At5g56220; At5g56220/K24C1_3; F16G20.140; GSVIVT00003329001; GSVIVT00012890001; Os01g0760400; Os08g0499100; Os09g0481600; OsI_03819; OsI_29754; OsI_31792; OsJ_03529; OsJ_27818; OsJ_29780; P0460E08.19; P0463D04.26; P0512C01.8

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G23440.1	Disease resistance protein (TIR-NBS class) chr4:12237765-12240659 FORWARD LENGTH=964	2.0e-39	54%
RefSeq	Arabidopsis thaliana	NP_194075.1	TIR-NBS class of disease resistance protein [Arabidopsis thaliana]	3.0e-39	54%
RefSeq	Populus trichocarpa	XP_002303599.1	tir-nbs resistance protein [Populus trichocarpa]	7.00649e-44	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GWT3

Fln msg: Distance to subject end: 446 aas, your sequence is shorter than subject: 136 - 1005

Fln protein: AVWKESENEIEIQKCRYSQRMKDRRQRAKLLHKTRYAKRNKDLSYLYGRGIACVSGDSGIGKTELVLEFAYRYAQRYRMVLWVGGETRYLRQNYLNLSRLLGLDVSNETHIASEKGRNKTFEEQEMEALQRVRKEL

Protein Length: 137

Fln nts: GCAGTATGGAAAGAATCTGAAAATGAAATTGAAATACAAAAATGCAGGTATTCACAGAGGATGAAAGATCGTCGCCAGCGTGCAAAGTTACTGCATAAAACAAGGTATGCAAAGAGGAATAAAGATTTAAGCTATTTATATGGTAGAGGTATTGCATGTGTATCAGGGGATTCAGGAATTGGAAAAACCGAGTTAGTACTGGAATTTGCATACAGATATGCACAGAGGTATAGGATGGTATTATGGGTTGGTGGAGAAACTCGTTACCTGAGACAGAACTATTTGAATCTGTCTCGGTTACTTGGGTTGGATGTGAGTAATGAGACACATATTGCCTCAGAGAAAGGTAGGAATAAGACATTTGAGGAGCAGGAAATGGAAGCCTTGCAGAGAGTGAGAAAGGAGCTCAG

Fln Alignment:

CL6726Contig1___VWKESENEIEIQKCRYSQRMKDRRQRAKLLHKTRYAKRNKDLSYLYGRGIACVSGDSGIGKTELVLEFAYRYAQRYRMVLWVGGETRYLRQNYLNLSRLLGLDVSNETHIASEKGRNKTFEEQEMEALQRVRKEL
B9GWT3_______________VWKESEREIEMQSGDFSQR----QHLVKPKSSGRYGKRKRSTKILYGKGIACVSGESGIGKTELLLEFAYRYHQRYKMVLWIGGESRYIRQNYLNLRSFLDVDIGVENY--SGKSRIRSFEEQEEEAISKVRKEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain