SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene38962

Length: 987 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene38962

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	XRCC4 homolog [Populus nigra]	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Chromosome chr18 scaffold_122, whole genome shotgun sequence	-	-	5.783e-06	-

Source	Gene names
Sma3	At3g23100; GSVIVT00001815001; GSVIVT00001816001; GSVIVT00020147001; LOC_Os03g53000; MXC7.14; OJ1365_D05.20; OSJNBa0057G07.1; Os03g0740800; OsI_13450; OsJ_12511; POPTRDRAFT_230894; PnXrcc4; RCOM_0908820; VITISV_030334; XRCC4;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	alanine-tRNA ligase activity	GO:0004813	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein C-terminus binding	GO:0008022	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	double-strand break repair	GO:0006302	Biological Process	-
Sma3	DNA recombination	GO:0006310	Biological Process	-
Sma3	alanyl-tRNA aminoacylation	GO:0006419	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	DNA double-strand break repair and VJ recombination XRCC4, C-terminal	IPR014751	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, N-terminal	IPR018164	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G23100.1	XRCC4 homolog of human DNA ligase iv-binding protein XRCC4 chr3:8220721-8221991 FORWARD LENGTH=264	54%
RefSeq	Arabidopsis thaliana	NP_001154639.1	DNA repair protein XRCC4 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002315726.1	predicted protein, partial [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA21

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 286 - 334

Fln protein: MASSADTCVRIEANGANKDVIYVKGTWFPTHFSLSITDGLHAWICDGSEKSVADRASQWDQSVSEYLEDAQRYLSHQHPGSVYTFKDAGNGSMRLSWTLEKEGTKLEWRWRCDKAPNDQKVNSEILDFLMDANTRLSEEVVRKTRSFDRMKVEAEKCLAQSEKFKNEKAEFETAVFAKFVAVLNSKKAKLRELREKCLHSEPAKKNVQEDASDFSEEETDRESDQNDNEESSAGPTNSDSKDSEVAKLNKKPLKSTGGVSPGQSNKRVESRLEKRNPIEEKQNIIS

Protein Length: 287

Fln nts: GAATCCCTTAAAAATCGTCATTCATATTCAAAAACTGCCCGCCAATGAAACCAGCAAATTTAGTCACAAAGCCGATGCAGATCTCTTCAGAAATTAACTGAAAATATCGAAACCCTCGTGCACAGAC_-_ATGGCGTCCAGCGCGGATACCTGCGTTCGTATAGAAGCAAACGGTGCGAATAAGGATGTCATATACGTCAAGGGTACATGGTTTCCAACCCACTTTAGTCTCTCTATCACAGACGGTCTCCATGCCTGGATTTGTGACGGTTCAGAGAAGAGTGTGGCTGATCGTGCTAGCCAATGGGACCAGTCTGTCTCGGAGTATCTGGAAGATGCACAACGGTATCTCAGTCACCAGCACCCTGGATCGGTGTATACTTTTAAAGATGCTGGAAATGGGTCCATGAGGTTGTCATGGACCTTAGAGAAAGAAGGAACAAAGCTGGAATGGCGATGGAGATGTGACAAAGCACCAAATGACCAGAAAGTCAATTCTGAAATACTGGATTTTCTGATGGATGCAAATACGAGATTAAGTGAAGAAGTTGTTCGGAAGACACGATCATTTGATAGAATGAAAGTAGAAGCTGAAAAATGCTTAGCACAGAGTGAAAAATTTAAGAATGAGAAAGCAGAGTTTGAAACTGCTGTTTTTGCAAAGTTTGTTGCAGTGCTCAATTCAAAGAAAGCAAAGCTTCGAGAACTAAGGGAGAAATGCTTGCATTCAGAACCGGCAAAAAAAAATGTTCAAGAAGATGCAAGTGACTTCTCTGAGGAAGAAACGGACAGGGAAAGTGACCAAAATGATAATGAGGAAAGTAGTGCTGGTCCTACAAACAGTGATTCAAAGGATTCTGAAGTTGCAAAATTAAACAAGAAGCCTCTGAAAAGCACTGGTGGAGTTTCTCCAGGACAATCAAATAAGCGAGTAGAAAGCCGATTAGAAAAACGAAATCCAATAGAGGAAAAACAAAACATAATTAGTGA

Fln Alignment:

CL4524Contig1___MASSADTCVRIEANGANKDVIYVKGTWFPTHFSLSITDGLHAWICDGSEKSVADRASQWDQSVSEYLEDAQRYLSHQHPGSVYTFKDAGNGSMRLSWTLEKEGTKLEWRWRCDKAPNDQKVNSEILDFLMDANTRLSEEVVRKTRSFDRMKVEAEKCLAQSEKFKNEKAEFETAVFAKFVAVLNSKKAKLRELREKCLHSEPAKKNVQEDASDFSEEETDRESDQNDNEESSAGPTNSDSKDSEVAKLNKKPLKSTGGVSPGQSNKRVESRLEKRNPIEEKQNIIS
D5AA21_______________MAASADTCVRIEANGANRDVIYVKSTWFPTHFSLSITDGLHAWICDGSEKNVADRASQWDQSVSEYLEDAQRYLSYQQPGSAYTIKDAGNGSIRLSWTLEKQGTKLEWRWKCDKAPNEQKVISDILDFLMDANTRLSEEVVRKTRSFDRMKVEAEKCLAQSEKFKNEKAEFETTIFAKFVAVLNSKKAKLRELREKCLHSEPAKKNVREDASDFSEEETDMESDQNDNEESSAGPTHSDSKDSEGAEINKKPLKSTGGVSPAPSNKATENRLEKQNSTDEKKNITS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain