SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene38954

Length: 332 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene38954
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGATTCACACTGGTGCGAGAAGACACCCTTCGAACTTTCAATGCAAGACGACAATCCAATGGAAACCGTGCTTGCTTAGAATATGTCTCAGGTCAACACTCGACCAACTAAAAATATGAACTCTTCAGTGAATCTTGATGATGAATATACTCAAGATGGGTCTGTAGATATTCATGGAAAACCTTCAGTCAAGAACAAATCGGGGAACTGGAAGGCTTGTCCATTTATTTTGGGGAATGAGTGCTGCGAAAGATTGGCATACTATGGAATCAATTCAAATATGGTGAGGTATTTGAC

Ace file of the UniGene sp_v3.0_unigene38954 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter, putative n=1 Tax=Ricinus communis RepID=B9T6M4_RICCO	-	-	2.0e-17	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Peptide transporter	-	-	5.033e-10	-

Source	Gene names
Sma3	AT3G54140; At1g62200; At2g02020; At2g02040; At3g54140; At5g01180; B1026C12.10; B1377B10.10; F14H20.11; F19K23.13; F24B22.100; F7J8_160; GSVIVT00021470001; GSVIVT00021471001; GSVIVT00030681001; LOC_Os03g13240; LOC_Os03g51050; LOC_Os10g33170; LeOPT1; NTR1;

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54140.1	ATPTR1, PTR1 peptide transporter 1 chr3:20045885-20048154 REVERSE LENGTH=570	1.0e-21	73%
RefSeq	Arabidopsis thaliana	NP_190982.1	peptide transporter PTR1 [Arabidopsis thaliana]	2.0e-21	73%
RefSeq	Populus trichocarpa	XP_002315835.1	predicted protein [Populus trichocarpa]	4.0e-21	76%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: Distance to subject end: 512 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 71 - 594

Fln protein: MSQVNTRPTKNMNSSVNLDDEYTQDGSVDIHGKPSVKNKSGNWKACPFILGNECCERLAYYGINSNMVRYL

Protein Length: 72

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGATTCACACTGGTGCGAGAAGACACCCTTCGAACTTTCAATGCAAGACGACAATCCAATGGAAACCGTGCTTGCTTAGAAT_-_ATGTCTCAGGTCAACACTCGACCAACTAAAAATATGAACTCTTCAGTGAATCTTGATGATGAATATACTCAAGATGGGTCTGTAGATATTCATGGAAAACCTTCAGTCAAGAACAAATCGGGGAACTGGAAGGCTTGTCCATTTATTTTGGGGAATGAGTGCTGCGAAAGATTGGCATACTATGGAATCAATTCAAATATGGTGAGGTATTTGAC

Fln Alignment:

CL4355Contig1___DDEYTQDGSVDIHGKPSVKNKSGNWKACPFILGNECCERLAYYGINSNMVRYL
A9NVR2_______________EDEYTGDGSVDFWGRPSVKENTGNWRACPFILGNECCERLAYYGINTNLVTYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain