SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene38940

Length: 514 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene38940
CAGAGACAAAGCTGAGGAAGCTCGACAAGCTAGTCGACTTCTAACCAAATATATTGATTACAAAAATTGTGAAGGAGTGTCTGAAGTTATTATTGCAAAGAACATATCTCAAGGATTTCGAGGTATCGTGCAGACAATGGGTCTTGCTAATCTGAAGCCAAACATAGTTTGCATGAGATATCCTGAAATTTGGAGAGAGGGAAGCGCTAACAATATTCCAGACTCTTTTGTCAGCATTATTAATGACTGCGCTATTGCAAACAAAGCAGTGGTTATAGTCAAAGGATTAGATGAATGGCCTAGTGAATATCAGAAACAGTATGGCACAATCGACCTTTATTGGATAGTTCGGGATGGGGGCTTAATGCTGTTGCTGTCTCAGCTACTAAGGGCAAGAGATAGCTTTGAGAGCTGTAAAATTCAGGTATTTTGCATTGCTGAAGAAGACATGGAAGCTGAAGAGCTTAAGGCAGATGTTAAAAAATTTCTTTATGATTTGCGGATGCAAGCTGAG

Ace file of the UniGene sp_v3.0_unigene38940 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPA: cation chloride cotransporter [Medicago truncatula f. tricycla]	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Cation chloride cotransporter	-	-	3.449e-09	-

Source	Gene names
Sma3	At1g30450; F26G16.3; GSVIVT00028401001; OSJNBa0078D03.20; Os01g0304100; Os01g19850; Os08g0323700; OsI_01563; OsI_28779; OsJ_01456; OsJ_26882; P0475H04.13; PHYPADRAFT_112971; PHYPADRAFT_175763; PHYPADRAFT_204831; PHYPADRAFT_217277; POPTRDRAFT_642216; POPTR

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sodium:potassium:chloride symporter activity	GO:0008511	Molecular Function	-
Sma3	cation:chloride symporter activity	GO:0015377	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	sodium ion transport	GO:0006814	Biological Process	-
Sma3	chloride transport	GO:0006821	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Interleukin-6/G-CSF/MGF	IPR003573	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Na/K/Cl co-transporter superfamily	IPR004842	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G30450.1	CCC1, ATCCC1, HAP5 cation-chloride co-transporter 1 chr1:10762905-10769061 FORWARD LENGTH=975	74%
RefSeq	Arabidopsis thaliana	NP_849732.1	cation-chloride co-transporter 1 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002298833.1	cation-chloride cotransporter [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9L5

Fln msg: Distance to subject end: 130 aas, your sequence is shorter than subject: 171 - 458

Fln protein: RDKAEEARQASRLLTKYIDYKNCEGVSEVIIAKNISQGFRGIVQTMGLANLKPNIVCMRYPEIWREGSANNIPDSFVSIINDCAIANKAVVIVKGLDEWPSEYQKQYGTIDLYWIVRDGGLMLLLSQLLRARDSFESCKIQVFCIAEEDMEAEELKADVKKFLYDLRMQAE

Protein Length: 172

Fln nts: CAGAGACAAAGCTGAGGAAGCTCGACAAGCTAGTCGACTTCTAACCAAATATATTGATTACAAAAATTGTGAAGGAGTGTCTGAAGTTATTATTGCAAAGAACATATCTCAAGGATTTCGAGGTATCGTGCAGACAATGGGTCTTGCTAATCTGAAGCCAAACATAGTTTGCATGAGATATCCTGAAATTTGGAGAGAGGGAAGCGCTAACAATATTCCAGACTCTTTTGTCAGCATTATTAATGACTGCGCTATTGCAAACAAAGCAGTGGTTATAGTCAAAGGATTAGATGAATGGCCTAGTGAATATCAGAAACAGTATGGCACAATCGACCTTTATTGGATAGTTCGGGATGGGGGCTTAATGCTGTTGCTGTCTCAGCTACTAAGGGCAAGAGATAGCTTTGAGAGCTGTAAAATTCAGGTATTTTGCATTGCTGAAGAAGACATGGAAGCTGAAGAGCTTAAGGCAGATGTTAAAAAATTTCTTTATGATTTGCGGATGCAAGCTGAG

Fln Alignment:

CL4207Contig1___DKAEEARQASRLLTKYIDYKNCEGVSEVIIAKNISQGFRGIVQTMGLANLKPNIVCMRYPEIWREGSANNIPDSFVSIINDCAIANKAVVIVKGLDEWPSEYQKQYGTIDLYWIVRDGGXXXXXXXXLRARDSFESCKIQVFCIAEEDMEAEELKADVKKFLYDLRMQAE
D5A9L5_______________EKAEEAKVACRQLGAYIDYKNCEGVAEIIVAENMQEGFRGIVQTMGLGNLKPNIVVMRYPEIWRQENSKEISETFVSIINDCIVANKAVVTVKGLDEWPGEYQKQFGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDTEAEELKTDVKKFLYDLRMQAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain