SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene38892

Length: 1718 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene38892 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment) n=1 Tax=Coriandrum sativum RepID=FATA_CORSA	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Acyl-ACP thioesterase	IPR002864	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G13050.1	Acyl-ACP thioesterase chr4:7617739-7619355 FORWARD LENGTH=367	67%
RefSeq	Arabidopsis thaliana	NP_193041.1	fatty acyl-ACP thioesterase A [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002303055.1	predicted protein, partial [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS31

Fln msg:

Fln protein: MLSAGNCHGHPWKFSQAIHTKAIAIKPSSWMNAVPASLNRKLEISASAFPNRRIWEEEAQQLSLADRLRPGGLAPDGFSYKENFIIRCYEVGVNRTATIEAVANLLQEVACNHVHSLGFSTDGFATTPTMRKQHLIWVAARMHIEVYQYPAWGDVVEIETWGQTEGKIGTKRDWILKDATRDNIIGRATSTWVMMNQDTRRLARVTDDVRDEHIIHCPKSPRFAFPDENNNSSKKIPKLADPAQHSRSGLMPRRSDLDMNQHVNNVTYIGWVLESMPQETLDTHELEMITLDYRRECNKDDIVESLTSLASETSDTSQVDNSTFASNGNATSTNGVAKVTSPGKLSLSSEGLEFLHVLKQAESGFEINRGRTKWRKLGR*

Protein Length: 381

Fln nts: ACTGTGTGAGAGAGCGCGTTCGTCGCACAAGGGGCCTAGTGGAGAGTTGTTTCATGTTGACTCTGTGTAAGAAGAGAGTAGGCCAAA_-_ATGCTGAGCGCGGGGAATTGCCATGGCCACCCCTGGAAGTTCTCTCAAGCCATACATACGAAGGCCATCGCCATCAAGCCCTCATCATGGATGAATGCAGTCCCTGCTTCTTTGAACAGGAAGCTCGAAATTTCCGCCTCGGCTTTCCCCAACAGGAGAATTTGGGAAGAGGAAGCGCAGCAACTGAGCTTAGCGGATCGGCTGAGGCCCGGCGGCCTCGCCCCCGACGGGTTCTCGTACAAGGAGAACTTCATCATCCGCTGCTATGAAGTCGGAGTCAACCGCACTGCCACCATTGAAGCTGTCGCCAATCTCCTCCAGGAGGTTGCATGCAACCATGTTCATAGCCTGGGCTTCTCCACCGATGGATTCGCCACCACGCCCACCATGAGGAAGCAACACCTCATCTGGGTCGCTGCTCGCATGCATATTGAGGTCTACCAGTATCCCGCCTGGGGGGACGTGGTGGAAATCGAAACATGGGGCCAAACTGAGGGGAAAATTGGGACAAAACGTGACTGGATTCTTAAGGATGCCACCAGAGATAACATTATTGGCCGAGCCACAAGCACATGGGTGATGATGAATCAGGATACCAGACGGCTTGCTAGAGTAACTGATGATGTGAGGGATGAACACATCATTCATTGCCCAAAATCTCCTAGGTTTGCATTTCCAGACGAAAATAATAACAGTTCCAAGAAGATACCTAAGCTTGCAGATCCTGCACAACACTCAAGATCTGGTCTTATGCCAAGGAGATCTGATCTGGATATGAATCAGCATGTGAATAATGTGACATACATTGGATGGGTTCTTGAGAGCATGCCACAAGAAACTTTGGATACACATGAGCTAGAAATGATAACTCTTGATTATAGGCGAGAATGCAACAAAGATGACATTGTTGAGTCTTTGACAAGCTTAGCATCTGAAACATCTGACACTAGTCAAGTTGACAATAGTACTTTTGCATCTAATGGAAATGCAACTTCCACAAATGGAGTTGCAAAAGTTACAAGTCCAGGGAAACTCTCATTGAGTAGTGAGGGCTTGGAATTTTTACATGTGCTAAAACAGGCTGAGAGTGGTTTTGAGATTAATAGAGGTCGAACTAAATGGAGGAAACTTGGACGGTAA___TTTATGAAATATCATTTTTTAGCCAAAAGGTCTCCATTCCCTGAGGTATGTCTCCATGAAAAGTACAAATTTATATTTAGCTTGGTAAGTAACTAGTGTTCAGTGGATTAGAAGTATGATGCTTTTAGCTTTTAGAAATAGCTTTGAGTTGCCTCATGGGCGTAAGAGGCCTCTATATTCCAGAGTGCTCATAGTTTGGCAAGAGATGCTTCACTTTGGTGGAAGGACTAGAAAATGCTTCTGGTGTACTTTGCCCATTTTATTGTGAGTGGTGCTTCTGTGGGGTAGATATTATCGACTATTAGCATTTAGGCAGGAAATGCTTTGGGAAATCTTCAAGTTTTTTCCATCGAGTTGTATGGATTGTTATTGAGCTGAAACTTTTAAATTGTAATTTTAAAAAGCACTGAAAATATTGTTATTTGTATTTTTTTAGACAACTACATTAAGGGATGAAGAGCTAGCTTTGATCTGTTTTATATTGAGTGGAG

Fln Alignment:

CL3292Contig1___MLSAGNCHGHPWKF-SQAIHTKAIAIKPSSWMNAVPASLNR-----KLEISASAFPNRRIWEEEAQQLSLADRLRPGGLAPDGFSYKENFIIRCYEVGVNRTATIEAVANLLQEVACNHVHSLGFSTDGFATTPTMRKQHLIWVAARMHIEVYQYPAWGDVVEIETWGQTEGKIGTKRDWILKDATRDNIIGRATSTWVMMNQDTRRLARVTDDVRDEHIIHCPKSPRFAFPDENNNSSKKIPKLADPAQHSRSGLMPRRSDLDMNQHVNNVTYIGWVLESMPQETLDTHELEMITLDYRRECNKDDIVESLTSLASETSDTSQVDNSTFASNGNATSTNGVAKVTSPGKLSLSSEGLEFLHVLKQAESGFEINRGRTKWRK
B8LS31_______________MLSVGNCHCRPWKCRANAITIKSPFTSSSPWINTVPAPSNRTLRSFKLEISASASSKTRICEEEAQQLSLADRLRPGGLAPDGFSYKENFTIRCYEVGVNRTATIEAVANLLQEVACNHAQSVGFSTDGFATTPTMRKRHLIWVAARMHIEVYKYPAWGDVTEIETWCQSEGKIGTRRDWILKDATTDNIIGRATSTWVMMNQDTRRLYRVTDDVRDEYMVHCPKSLRLAFPEENNNSSKKIPKLEDPAQHSRSGLMPRRADLDMNQHVNNVTYIGWVLESMPQEVLDTHELEMITLDYRRECNKDDIVESLTSLLSEKSDSSAVESSTFASNGNATSTNGVATTRSPGRLSSSSRGFEFLHMLRLAESGFEINRGRTEWRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain