SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene38869

Length: 1569 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene38869

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative U3 small nucleolar RNA-associated protein 11 [Arabidopsis thaliana] sp\|Q9M223.1\|UTP11_ARATH RecName: Full=Probable U3 small nucleolar RNA-associated protein 11; Short=U3 snoRNA-associated protein 11 emb\|CAB81822.1\| putative protein [Arabidopsis t	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	U3 snoRNA-associated protein 11	-	-	1.501e-09	-

Source	Gene names
Sma3	At3g60360; CHLREDRAFT_127460; GSVIVT00033618001; MICPUCDRAFT_17462; MICPUN_82666; OSTLU_32092; Os01g0810000; OsI_04152; OsJ_03819; Ot06g01740; PHYPADRAFT_18094; POPTRDRAFT_667207; RCOM_0901060; T8B10_20; THAPSDRAFT_30550; VITISV_023155;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	small-subunit processome	GO:0032040	Cellular Component	-
Sma3	rRNA processing	GO:0006364	Biological Process	-
Sma3	megagametogenesis	GO:0009561	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Small-subunit processome, Utp11	IPR007144	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G60360.1	EDA14, UTP11 embryo sac development arrest 14 chr3:22312477-22314002 REVERSE LENGTH=228	56%
RefSeq	Arabidopsis thaliana	NP_191595.1	putative U3 small nucleolar RNA-associated protein 11 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002322578.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM47

Fln msg:

Fln protein: MSSLRNAVKRRAHKERAQPAARCKFGLLEKHKDYVLRAGDYHKKQEKIQRLREKAASRNPDEFYFKMINSRTVDGVHCPQTGAKQYSNEELLLMKTQDIQYVLQKAQSEKKKVERLQSALHCIGCPPSNRHIYFAEDREEAKELEQTILSSKEKANNPAQLPKHIQKKIAAAYKELEKTNNRIDELLNKALDLILPRKLRGRGRKGNLHGHRWLTERKR*

Protein Length: 221

Fln nts: ATCTTCACTTAAATTCATCTATTTCTTCATCTCCAGACAAATCAATACTCTGATCTCCATTCTTAGTTTGACAACAAGTTTATCCCTGTTTAAATGTTGATGGGATAGATAAACTCCCACATAATCTCCAACATCCGTTTTGATAAACAAACCCACCAAAGTGCACTTAAAAAATTTGGCCCTCTAAATCCGCGGGTAAACTTTGGTTCTGTAACTCCTCTACCCGCGATCTTCACTTAAATTCATCTATTTCTTCATCTCCCCTACTGTGCAGGTTCTGAATTCTCTGTGAAGATCAGGCCCTTGGTCAGGCGGCGGGATATAGCGAGTTTGAATTTCAGTAATGTGAATAACCTTGACTCATTCGAATCGAAGGTTGAAGCTCAGGAGATCTGTATGTTGATTGACTGAAGGTTGAAGCTGAAGCAGTTGCCGTCTTGAATTCACTCACTGGTTCACTGAAGAGAGCTTTAGAGCCTGAACTGAAGTTTGAACAGCAGCAACTCAACAGCCGAGAATTTGAACTCTGGACTCTTGAGATTTACGTTATCTAGTTTTCGATT_-_ATGTCGTCGTTAAGAAATGCTGTAAAGCGGCGGGCTCACAAGGAACGCGCCCAGCCGGCTGCAAGGTGTAAATTTGGCTTACTAGAGAAACACAAGGACTATGTACTTAGGGCTGGTGATTACCACAAGAAGCAGGAAAAAATCCAGAGGCTTCGAGAGAAAGCAGCATCTAGAAACCCTGATGAATTTTATTTTAAGATGATCAACTCTAGGACTGTTGATGGAGTGCACTGTCCACAAACTGGTGCAAAGCAATATTCCAATGAGGAACTGTTATTAATGAAGACCCAGGACATTCAGTACGTGCTTCAAAAAGCACAGAGTGAAAAGAAGAAAGTAGAGCGACTTCAGTCTGCACTTCATTGCATTGGTTGCCCTCCTTCAAACAGACACATTTATTTTGCCGAAGACAGGGAGGAGGCAAAAGAATTGGAACAAACAATCTTGTCATCGAAAGAGAAGGCAAATAATCCTGCTCAATTGCCAAAGCATATACAAAAGAAAATTGCTGCAGCATACAAGGAGCTGGAGAAAACAAACAACCGAATAGATGAGTTACTAAACAAAGCGCTGGACTTAATTTTGCCAAGGAAATTGAGGGGGAGGGGCAGAAAAGGGAACCTCCATGGTCATAGATGGCTAACTGAACGGAAACGGTGA___TCTCCGGAAATTTACAATATTTGAATCCCGTCAATTGTTTAAACTTTTGTGTTTAGTTGGATGATAAGCCTGGTTTTGATAATTTGGGCTATTTGTGCATCAATAGATGCAATGGTTTCAAAAAACTTCTTGTTATAAGAGAACTTTACTAAAATGCCTTGGTTTATAGGAGACCTTTACTAAAATGCCTTGGTTTATAAAAAGGTACTTAAATGGCGTTGTTTCCTTTGCTCATTATTGATGGACACAAATGATCTCTTTCAAAAGCATACCAATGGTATTCATGAACCTTTTAAAAAAGTATTCAAATATATAGTAACCCATGAATGTCTTTGGTTGGTTTGTC

Fln Alignment:

CL2856Contig1___MSSLRNAVKRRAHKERAQPAARCKFGLLEKHKDYVLRAGDYHKKQEKIQRLREKAASRNPDEFYFKMINSRTVDGVHCPQTGAKQYSNEELLLMKTQDIQYVLQKAQSEKKKVERLQSALHCIGCPPSNRHIYFAEDREEAKELEQTILSSKEKANNPAQLPKHIQKKIAAAYKELEKTNNRIDELLNKALDLIL
B8LM47_______________MSSLRNAVKRRTHKERAQPAARSKFGLLEKHKDYVLRARDYHKKQENIQRLREKAASRNPDEFYFKMINTRTVDGVHRPQSGAKQYSSEELLLMKTQDIQYVLQKAQSEKKKAERLQSALHCIGCRPSNRHTYFAEDREEAKELEQVILSSEEKAIFPAKLPKRIKRKMAGAYKELEERKKRADEMQNIVTEMSL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain