SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene38813

Length: 1329 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene38813

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SNF2 and helicase domain-containing protein [Arabidopsis thaliana] gb\|AEC10493.1\| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	SNF2P	-	-	8.254e-08	-

Source	Gene names
Sma3	615K1.5; At2g44980; CHR1525; CHR913; GSVIVT00019145001; LOC_Os03g01200; Os03g0101700; PHYPADRAFT_108610; POPTRDRAFT_781297; RCOM_1609320; Snf2P; Tm_AY485644.6; VITISV_034336;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G44980.2	SNF2 domain-containing protein / helicase domain-containing protein chr2:18552343-18556669 REVERSE LENGTH=877	55%
RefSeq	Arabidopsis thaliana	NP_973689.2	SNF2 and helicase domain-containing protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002326828.1	chromatin remodeling complex subunit, partial [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACY7

Fln msg: your sequence is longer than subject: 259 - 153

Fln protein: MNKAKDGSLNKDLGDNVRGRKRASSRSDKELEEARAEKRRKVEDKKRAKWEALGYKSLAVQGTSESLNVVPNSDHGEVHFVFGDCTNPIKDHPSEATIIFSCIDNSGNWGSGGMFDSLANLSQIVPDAYGKAYECEDLHLGDLHLIPLSDENKLDISNEASQWVALAVVQTYNPRRKVARSDISLPHLEGCLERVAISALRKSASIHMPRISCRSGEGHKEWYTVERLLHKYAATYGVKIYVYYFKRATRSESNIKPE*

Protein Length: 260

Fln nts: GAATTAAGCTCCATTCACATGAATTGAGAGGTGTTGATTCTATTTACACATATTCTGGAAATGATGTATCTTTTGCAAAATATGCAAAGGAAGTAGACTCAGACCATGCCAGAAATGCTGATCAAGTTGCATTTGAGGCTTGG_-_ATGAACAAAGCAAAGGATGGATCATTGAATAAGGATTTGGGTGACAATGTGAGAGGAAGAAAACGGGCATCTTCACGCAGTGATAAAGAACTAGAGGAGGCTAGAGCTGAGAAGCGGAGAAAAGTGGAAGATAAAAAACGTGCCAAATGGGAAGCTCTTGGTTATAAGTCTTTAGCTGTTCAAGGTACATCTGAGAGTCTGAATGTTGTACCAAATTCAGATCATGGCGAAGTACATTTTGTCTTTGGAGATTGTACAAATCCTATAAAAGATCATCCTTCTGAAGCGACAATAATTTTTAGTTGCATTGACAATTCTGGCAATTGGGGAAGTGGAGGCATGTTTGATTCCCTAGCAAATCTTTCTCAAATAGTTCCAGATGCTTATGGGAAAGCTTATGAGTGTGAAGATCTTCATTTAGGAGATTTACATCTTATACCACTCTCAGATGAAAATAAGCTGGACATATCAAATGAAGCTTCACAATGGGTAGCTCTTGCTGTTGTACAAACATATAATCCTAGACGTAAAGTAGCCCGCAGTGATATCTCTTTACCTCATTTGGAAGGATGCTTGGAAAGAGTTGCCATCTCAGCCCTTCGAAAGTCTGCATCTATTCATATGCCAAGAATTAGTTGCCGTTCAGGAGAGGGACATAAAGAATGGTATACTGTGGAACGTCTTCTGCACAAGTATGCAGCTACTTATGGTGTAAAAATCTATGTGTACTATTTTAAGCGGGCAACAAGAAGTGAATCCAACATCAAACCTGAATGA___TGAGGTGGCTCTTATACACATGGAAGCTTGCTGCATACAACTACCTTACAACAGAAGGCATTGTAGGATGTTAAAAGTCTGAGGAAATCTGATAGTCTAATCAAGACCTGTGATTGTTATCATTCCTTTATGTGCTATACTTACATTCTGCCTTTCTTTCATTCATCTGTTTAAGTTTTGTCCCTGATCTTTCATAACCCTTTTTTGAAGTTAAAAATGGCAAAGGAATAAACCTTCTCATTGATGATTGTCAATTTATTTTTAGCGTAGATAAATATTCTTGCTATATTTTCTTCACAAGGTCACAGCATTCGAGTTGTTATGATCTCAGATATCACACTAGTAGACATCAACCCAAAATGTATATTTGTTGGGTAGTCTTCTGGTATTGTAGACATAATCATTATAT

Fln Alignment:

CL1941Contig1___MFDSLANLSQIVPDAYGKAYECEDLHLGDLHLIPLS--------DENKLDISNEASQWVALAVVQTYNPRRKVARSDISLPHLEGCLERVAISALRKSASIHMPRISCRSGEGHKEWYTVERLLHKYAATYGVKIYVYYFKRATRSESNIKPE
D5ACY7_______________MFDALANLSQIVPDAYRKAHECEDLHLGDLHFIPISVCVSGKNSDENKLDTSNEDSQWVALAVVQTYNPRRKVARSDISLPHLEGCLEKVAISAVQKSASIHMPRIGCRSGQGHKEWYAVERLLHKYAATYGVKIYVYYFKRATRSESNNRPE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain