SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene38765

Length: 1246 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene38765 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	arginine/serine-rich-splicing factor RSP31 [Arabidopsis thaliana] sp\|P92964.2\|RSP31_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP31 gb\|AAL27502.1\|AF439831_1 AT3g61860/F21F14_30 [Arabidopsis thaliana] gb\|AAM78075.1\| AT3g61860/F21F14_30 [Arab	-	-	0.0	61%
FL-Next	sp=Arginine/serine-rich-splicing factor RSP31; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%
Sma3	Arginine/serine-rich splicing factor RSP41	-	-	2.678e-16	-

Source	Gene names
Sma3	AT2G46610; AT3G61860; AT4G25500; AT4g25500; AT5G52040; At2g46610; At3g61860; At4g25500; At5g52040; F21F14.30; GSVIVT00008658001; GSVIVT00026247001; H0716A07.4; M7J2.130; OSJNBa0020P07.8; Os02g0122800; Os04g0118900; OsI_05650; OsI_14641; OsJ_05182; OsJ_135

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	spliceosomal complex	GO:0005681	Cellular Component	-
Sma3	nuclear speck	GO:0016607	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Ribosomal RNA adenine methylase transferase	IPR001737	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G61860.1	ATRSP31, RSP31, At-RS31, RS31 RNA-binding (RRM/RBD/RNP motifs) family protein chr3:22900311-22902159 REVERSE LENGTH=264	61%
RefSeq	Arabidopsis thaliana	NP_567120.1	arginine/serine-rich-splicing factor RSP31 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002302651.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P92964

Fln msg:

Fln protein: MRPVFCGNFEYDTRQSDLERVFSRYGRVERVDMKSGFAFVYMEDERDAEDAIRGLDHTEFGRQRRRLSVEWARGDRGVRHREEGVMRPANTKPTKTLFVINFDPFTTRVRDLERHFAPYGKLVHVRIRRNFAFIQYETQEEATKALDCTHMSKLLDRVISVEYAIRDDDDRNGPPESPRRRGGYGRRVSPVYDRSVSPFYGRQARRASPDYGRVPSPIYERYHGPVNDRIRSPVYDRHRSRSPVKRSRARGY*

Protein Length: 254

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGAGAGAACGTGGGTCTCACCGTTCTGGCTCTATATATTGAACAGCCTTGCGATCCTATTCACAGTGCTGCAGCTGTCCTTACACTCCCCAGGTTCAAGGTAGCTATAAAGTAGGTAAGCATTCGTGGTCAACATCAAGAATTTCAAG_-_ATGCGGCCTGTGTTTTGTGGCAATTTTGAGTATGATACTCGCCAATCAGATTTAGAGCGGGTGTTTTCCAGATATGGAAGAGTAGAACGAGTGGACATGAAATCAGGTTTTGCTTTTGTGTACATGGAAGATGAGCGTGATGCAGAGGATGCTATCCGAGGGCTTGACCATACAGAATTTGGCCGGCAAAGGCGTCGCCTCTCTGTGGAGTGGGCAAGGGGTGATCGGGGAGTCCGTCATCGGGAGGAGGGCGTTATGCGACCAGCAAATACAAAACCTACAAAGACACTATTTGTGATCAATTTTGATCCCTTCACAACCAGGGTTAGAGACCTCGAGAGACATTTTGCACCATATGGTAAGTTAGTGCATGTGCGGATCAGGAGGAACTTTGCATTTATCCAATACGAAACACAGGAAGAAGCAACAAAAGCCTTGGATTGTACACACATGAGCAAATTGCTGGATCGTGTTATTTCAGTTGAGTATGCTATACGTGATGATGATGACAGAAATGGTCCACCGGAAAGTCCACGGCGGAGAGGTGGGTATGGAAGGCGGGTAAGCCCAGTTTATGATCGATCTGTCAGTCCTTTTTATGGCAGGCAGGCAAGAAGGGCCAGTCCTGATTATGGAAGGGTTCCAAGTCCCATTTATGAGAGATATCATGGTCCTGTTAATGATAGAATTCGCAGTCCTGTTTATGACAGGCATCGCAGCCGATCACCAGTAAAACGGTCAAGGGCCAGAGGATATTAA___GTACTTCGGGAATTGGGAATTCAAAATGCTGTAGGAGGCGTCAAATATTAAATCAACTGTAAATTGTTCTCAAGAATTGGAGAGGGAAGATGAGCCTTAATTTTAAAGAGGGTTTTTAGGGATTTGATTGGGACTATTTGTTGGTAGTGTAATCTGGCAGAAAAAAAGTTTCCAATAGACAATATGGGCTGTTTGCAGCGTAGCTGACTTTTATGTTTATCACTTGTCAGACAATGACGTGCAATGTAATAGAAGGAATTTGTTTCTTAATTTCTTTTAGTTTGGAAACTGTTAATGTGGACTCT

Fln Alignment:

CL1309Contig1___MRPVFCGNFEYDTRQSDLERVFSRYGRVERVDMKSGFAFVYMEDERDAEDAIRGLDHTEFGRQRRRLSVEWARGDRGVRHREEGVMR-PANTKPTKTLFVINFDPFTTRVRDLERHFAPYGKLVHVRIRRNFAFIQYETQEEATKALDCTHMSKLLDRVISVEYAIRDD---DDRNGPPESPRRRGGYGRRVSPVYDRSVSPFYGR-----QARRASPDYGRVPSPIYERYHGPV----------------NDRIRSPVYDRHRSRSPVKRSR
P92964_______________MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERG---RPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNG-GRSPR------RSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGRRSSDYGRQRSPGYDRYRSRSPVPRGR

SSRs (tot: 1)

Start position	End position	Sequence	Length
556	567	TCA TCA TCA TCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain