SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene38764

Length: 1999 nt

UniGene Fasta

>sp_v3.0_unigene38764
TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCATAACTGCCCAAGGAACAACCCATTTGACACTGTGGCTGTTGTAGTTATTTGAGAAATGGAGCTGAGGAGTGAAGCTTGCGCATCTTCTTTGCTAGCATTCATTGTAGGTTTACTATGGATGGCAATGACGATACCAGTAGAAGCCGCTCAGTTGAATAATATGGCACATTATGCATATTATGGCGGACGTGCATCCACTATGCCTCAGAACTATAAAGATGCTCTCACCAAATCCATTCTTTTCTTCGAAGGTCAGAGATCTGGTAAGCTTCCTCCCAACCAGCGGATGAGATGGCGAGGAGATTCCGCCCTTTCGGATGGATCTGCAGTAAACGTGGATTTGATGGGAGGATATTACGACGCAGGAGACAATGTGAAGTTCGGCTTCCCAATGGCTTTCACGACTACCATGCTGTCATGGAGCGTTTTGGAATTCGGAGAGTACATGGGAGATGACCTCGACCATGCAAAAACTGCCATCCGTTGGGCCACAGACTACCTACTTAAAGCCGCTGCACATCCCGGTGTTCTTTACGTCCAGGTAGCCGATCCGAATATGGATCACAAGTGCTGGGAGAGGCCCGAAGACATGGACACACCTCGCAATGTCTATAAAATAGATGCTGAACATCCAGGCTCTGACGTTGCCGCAGAAACTGCTGCAGCTCTTGCAGCCGCGTCCATGATATTCAGCACAACGGACCGTACTTATTCTCAGCTTCTCCTTCAAACTGCAACGCAGGTATTTGATTTCGCGGATAAACACAGAGGCACTTACAGTGACTCCCTCCAGTCGGAAGTTTGCCCATTCTATTGCTCTTACTCAGGATATCATGACGAATTACTGTGGGGAGCAGCATGGTTGCAAAAAGCGTCAGGGAGTGCATCATATCTCACCTACATCCAATCAAATGGCCAGACTTTTGGCGCGGATGACAACGTCAATTTATTGAGCTGGGACGAAAAGCATGCAGGAACCAGAGTTCTTTTGGCTAAGCAAGTTCTGACAGAAAATTCCAAGTCCCTTGAGGTATACAAGGGCCATGCTGACAACTTCATTTGCTCTCTCTTGCCCGGAACACCATCCTCTCAGGCGCAGTACACACCAGGGGGGCTACTCTTCGAGATGAGTGATAGTAATTTGCAATATGTGACATCCACAACTTTCCTGCTTTTTACTTATGCAAAATACTTAAGCGTTTCCAACCAAGTGGTGAGATGCGGGAACATCATAGCTACTCCAACCCGGATACGTACTCTTGCGAAAAGACAGGTGGACTATATACTGGGAGACAACCCTCTGGGAATGTCATACATGGTGGGCTACGGTGCCAAGTTTCCAGAACGTATACATCACAGGGGTTCGTCGTTGCCTTCCATATACCACCATCCCCAAAAGATTTCCTGCAACGATGGCTTCCAGTCGTTGTATAGCAACGGTCCCAACCCAAACATTCTTGTTGGTGCTGTAGTTGGAGGACCGGACAACAATGACCGCTTTTCCGACGACCGCAACGACTATGCGCACTCTGAACCCACCACTTATATCAATGCTCCATTCGTCGGTTGCCTCGCCTATTTGGCACAGTTCGGATCTTCGTTTTAGTAGCTGCAGAATTCTATTCTCCCGTCATATTGCCATATTGTTCCACTTCCCAGTAACAATATCCTATAAGGTCGTAATTTCTCTATATGCTTCTGCGGATATAAAATTTTCGCCCTCTGCATCTGTTTTTTGTTTCCTTTGGCAGGATGGAGGTGATCTCCATCATTACCTTCACATATTAGTTGTAGTAAAAAATGCTTTGACCGACAAGCCGGTGGATCCAATTTAGAGTCCCTCAGTTTCATGTAATCTCACACTAATATTTGCAATGTTTCTATGAACTTATGTTTAATTATATCCGCATGGTGGAGATTTCAATATTTCTTTCAATTCCATGTCACACTTATATTTGCG

Ace file of the UniGene sp_v3.0_unigene38764

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Endo-beta-1,4-glucanase n=1 Tax=Pinus radiata RepID=O64402_PINRA	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	0.0	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Six-hairpin glycosidase	IPR012341	-	-
Sma3	Glycoside hydrolase, family 9	IPR001701	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G02800.1	ATCEL2, CEL2 cellulase 2 chr1:613386-616103 REVERSE LENGTH=501	69%
RefSeq	Arabidopsis thaliana	NP_171779.1	endoglucanase 1 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002301487.1	glycosyl hydrolase family 9 [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUH0

Fln msg:

Fln protein: MELRSEACASSLLAFIVGLLWMAMTIPVEAAQLNNMAHYAYYGGRASTMPQNYKDALTKSILFFEGQRSGKLPPNQRMRWRGDSALSDGSAVNVDLMGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGEYMGDDLDHAKTAIRWATDYLLKAAAHPGVLYVQVADPNMDHKCWERPEDMDTPRNVYKIDAEHPGSDVAAETAAALAAASMIFSTTDRTYSQLLLQTATQVFDFADKHRGTYSDSLQSEVCPFYCSYSGYHDELLWGAAWLQKASGSASYLTYIQSNGQTFGADDNVNLLSWDEKHAGTRVLLAKQVLTENSKSLEVYKGHADNFICSLLPGTPSSQAQYTPGGLLFEMSDSNLQYVTSTTFLLFTYAKYLSVSNQVVRCGNIIATPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLPSIYHHPQKISCNDGFQSLYSNGPNPNILVGAVVGGPDNNDRFSDDRNDYAHSEPTTYINAPFVGCLAYLAQFGSSF*

Protein Length: 518

Fln nts: TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCATAACTGCCCAAGGAACAACCCATTTGACACTGTGGCTGTTGTAGTTATTTGAGAA_-_ATGGAGCTGAGGAGTGAAGCTTGCGCATCTTCTTTGCTAGCATTCATTGTAGGTTTACTATGGATGGCAATGACGATACCAGTAGAAGCCGCTCAGTTGAATAATATGGCACATTATGCATATTATGGCGGACGTGCATCCACTATGCCTCAGAACTATAAAGATGCTCTCACCAAATCCATTCTTTTCTTCGAAGGTCAGAGATCTGGTAAGCTTCCTCCCAACCAGCGGATGAGATGGCGAGGAGATTCCGCCCTTTCGGATGGATCTGCAGTAAACGTGGATTTGATGGGAGGATATTACGACGCAGGAGACAATGTGAAGTTCGGCTTCCCAATGGCTTTCACGACTACCATGCTGTCATGGAGCGTTTTGGAATTCGGAGAGTACATGGGAGATGACCTCGACCATGCAAAAACTGCCATCCGTTGGGCCACAGACTACCTACTTAAAGCCGCTGCACATCCCGGTGTTCTTTACGTCCAGGTAGCCGATCCGAATATGGATCACAAGTGCTGGGAGAGGCCCGAAGACATGGACACACCTCGCAATGTCTATAAAATAGATGCTGAACATCCAGGCTCTGACGTTGCCGCAGAAACTGCTGCAGCTCTTGCAGCCGCGTCCATGATATTCAGCACAACGGACCGTACTTATTCTCAGCTTCTCCTTCAAACTGCAACGCAGGTATTTGATTTCGCGGATAAACACAGAGGCACTTACAGTGACTCCCTCCAGTCGGAAGTTTGCCCATTCTATTGCTCTTACTCAGGATATCATGACGAATTACTGTGGGGAGCAGCATGGTTGCAAAAAGCGTCAGGGAGTGCATCATATCTCACCTACATCCAATCAAATGGCCAGACTTTTGGCGCGGATGACAACGTCAATTTATTGAGCTGGGACGAAAAGCATGCAGGAACCAGAGTTCTTTTGGCTAAGCAAGTTCTGACAGAAAATTCCAAGTCCCTTGAGGTATACAAGGGCCATGCTGACAACTTCATTTGCTCTCTCTTGCCCGGAACACCATCCTCTCAGGCGCAGTACACACCAGGGGGGCTACTCTTCGAGATGAGTGATAGTAATTTGCAATATGTGACATCCACAACTTTCCTGCTTTTTACTTATGCAAAATACTTAAGCGTTTCCAACCAAGTGGTGAGATGCGGGAACATCATAGCTACTCCAACCCGGATACGTACTCTTGCGAAAAGACAGGTGGACTATATACTGGGAGACAACCCTCTGGGAATGTCATACATGGTGGGCTACGGTGCCAAGTTTCCAGAACGTATACATCACAGGGGTTCGTCGTTGCCTTCCATATACCACCATCCCCAAAAGATTTCCTGCAACGATGGCTTCCAGTCGTTGTATAGCAACGGTCCCAACCCAAACATTCTTGTTGGTGCTGTAGTTGGAGGACCGGACAACAATGACCGCTTTTCCGACGACCGCAACGACTATGCGCACTCTGAACCCACCACTTATATCAATGCTCCATTCGTCGGTTGCCTCGCCTATTTGGCACAGTTCGGATCTTCGTTTTAG___TAGCTGCAGAATTCTATTCTCCCGTCATATTGCCATATTGTTCCACTTCCCAGTAACAATATCCTATAAGGTCGTAATTTCTCTATATGCTTCTGCGGATATAAAATTTTCGCCCTCTGCATCTGTTTTTTGTTTCCTTTGGCAGGATGGAGGTGATCTCCATCATTACCTTCACATATTAGTTGTAGTAAAAAATGCTTTGACCGACAAGCCGGTGGATCCAATTTAGAGTCCCTCAGTTTCATGTAATCTCACACTAATATTTGCAATGTTTCTATGAACTTATGTTTAATTATATCCGCATGGTGGAGATTTCAATATTTCTTTCAATTCCATGTCACACTTATATTTGCG

Fln Alignment:

CL1290Contig1___MELRSEACASSLLAFIVGLLWMAMTIPVEAAQLNNMAHYAYYGGRASTMPQNYKDALTKSILFFEGQRSGKLPPNQRMRWRGDSALSDGSAVNVDLMGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGEYMGDDLDHAKTAIRWATDYLLKAAAHPGVLYVQVADPNMDHKCWERPEDMDTPRNVYKIDAEHPGSDVXXXXXXXXXXXSMIFSTTDRTYSQLLLQTATQVFDFADKHRGTYSDSLQSEVCPFYCSYSGYHDELLWGAAWLQKASGSASYLTYIQSNGQTFGADDNVNLLSWDEKHAGTRVLLAKQVLTENSKSLEVYKGHADNFICSLLPGTPSSQAQYTPGGLLFEMSDSNLQYVTSTTFLLFTYAKYLSVSNQVVRCGNIIATPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLPSIYHHPQKISCNDGFQSLYSNGPNPNILVGAVVGGPXXXXXXXXXXXXYAHSEPTTYINAPFVGCLAYLA
A9NUH0_______________MKVGREACVASLVVSVFILLWMGM-VRVEATPFRKFLPHALYGRRGPSLSHDYRDALTKSILFYEGQRSGKLPLNQRMRWRADSALSDGAAEHVDLTGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGGRMGDNLDHARAAIRWATDYLLKATAHPGVIYVQVGDPNMDHKCWERPEDMDTPRNVYKIDAEHPGSDIAAETAAALAAASMVFRATDPTYSGHLLQTAMRVFDFADKHRGAYSDSLQSEVCPFYCSYSGYNDELLWGAAWLQRASRNVSYISYIQSNGQNLGAEDNVNIFSWDEKHAGARVLLAKEVLLRNSKSLQEYRGHADNFICSLLPGTQNSQAQYTPGGLLFKMSDNNLQYVTSTTFLLFTYAKYLTVSKQVVRCGNIIATPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPEHVHHRGSSLPSIYQHPRIIPCNDGFQSLYSNAPNPNRLVGAVVGGPDNNDRFSDERNDYAHSEPTTYINAPLVGSLAYLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain