SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene38736

Length: 1411 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene38736 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From Tomato Complexed With Peg400 pdb\|1ICP\|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From Tomato Complexed With Peg400 pdb\|1ICQ\|A Chain A, Crystal Structure Of 12-Oxophyto	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-
Sma3	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G76690.1	OPR2, ATOPR2 12-oxophytodienoate reductase 2 chr1:28778976-28780355 FORWARD LENGTH=374	68%
RefSeq	Arabidopsis thaliana	NP_177795.1	12-oxophytodienoate reductase 2 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002327289.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT17

Fln msg: atg_distance in limit (1-15): atg_distance = 7, W2: There is no M at the beginning,

Fln protein: KEENESKQQIPLITPYQLGPFTLSHRVVLAPLTRQRSYNYMPQPQAILYYSQRTSPGGLLIAEATAVSESALGYPNTPGIWTEEQVEAWKPIVNGVHEKGGVFFCQIWHSGRASHVDYQPNGQAPVSSSDRKISGQIVLPNGKDVADYSTPRALKTEEIPQIINDFRLAARNAIKAGFDGVEIHGAHGYLLDQFMKDSINNRADQYGGTLENRCRFPLEVVEAVANEIGAERVGIRLSPFAQYLESSDSDPEALGLYMAEALNKYNILYAHYVEPRLVTSFESVATNKSLLPMRKAFKGSFLVAGGYDREDENAAIASGKADLVVYGRIFLANPDLPRRFELNAPLNKYDRNTFYSSDSDPVVGYTDYPFLE*

Protein Length: 374

Fln nts: CAAAGAAGAAAACGAATCAAAGCAGCAGATCCCACTGATAACACCTTATCAGTTGGGTCCCTTTACCTTGTCTCACAGGGTGGTTTTGGCACCATTAACCAGACAGAGATCCTACAATTACATGCCCCAACCACAGGCAATCCTATACTATTCCCAGAGAACCAGCCCTGGAGGTCTTCTCATTGCAGAAGCTACTGCTGTCTCTGAGTCTGCCCTTGGGTACCCAAATACGCCTGGAATTTGGACAGAGGAGCAGGTGGAAGCATGGAAACCCATTGTCAATGGCGTCCACGAGAAAGGTGGTGTTTTCTTCTGTCAGATTTGGCACAGTGGAAGGGCTTCCCATGTGGATTATCAACCCAATGGCCAGGCTCCTGTTTCATCATCAGATCGAAAAATATCGGGACAGATTGTGTTACCCAACGGCAAAGATGTTGCAGATTATTCCACTCCTCGAGCTCTAAAAACAGAGGAGATTCCTCAGATTATTAATGACTTTCGTCTTGCTGCCAGAAATGCTATTAAAGCAGGTTTTGATGGTGTGGAAATTCATGGTGCTCATGGATACCTTCTTGATCAATTTATGAAAGACAGCATTAATAACAGAGCAGATCAGTATGGTGGGACACTTGAGAACCGGTGCAGGTTTCCTCTGGAGGTTGTTGAAGCAGTGGCAAATGAAATTGGAGCAGAGCGAGTGGGAATACGGCTCTCTCCATTTGCACAATATCTAGAATCTAGTGACTCAGATCCTGAGGCGCTGGGGCTTTACATGGCCGAAGCCTTAAATAAATACAATATCCTGTATGCCCACTATGTAGAGCCCAGACTGGTAACTTCATTTGAATCTGTTGCAACAAACAAGAGTCTGCTTCCAATGAGGAAGGCGTTCAAGGGGTCATTCTTGGTTGCAGGGGGTTATGACAGAGAAGATGAAAATGCAGCAATTGCAAGCGGCAAGGCTGATCTTGTAGTTTACGGTCGAATTTTTCTGGCGAACCCAGATTTGCCTAGAAGATTTGAGTTAAATGCTCCCCTCAACAAATATGACAGAAACACGTTTTACAGTTCTGATTCTGATCCTGTAGTTGGTTACACAGACTATCCATTCCTGGAGTGA___ACTATCGATTTATTGTTGCTCCAACGTCATCCAATAACATGTATGTATGGATGGATATGGATAAGGGCAAGGGCTAACGAGCCCGGCCGCTTAGCTGTAAGCTCGATAGCCATTTAAAACAGACACTTGTGGTGTTTTGGGAACACTCCATTCTCACTGAAAATTATATGGCTATCGAATTTACAGCTACACAAGCATTAGCAAGTTCGTTAGCCCTTACCTATGGATAAGTGGTGCTTCGCAGGAATATGGTTAAGTGGTGCATTTAAAATGATATTTGGCCAATCGTTT

Fln Alignment:

CL706Contig1___EENESKQQIPLITPYQLGPFTLSHRVVLAPLTRQRSYNYMPQPQAILYYSQRTSPGGLLIAEATAVSESALGYPNTPGIWTEEQVEAWKPIVNGVHEKGGVFFCQIWHSGRASHVDYQPNGQAPVSSSDRKISGQIVLPNGKDVADYSTPRALKTEEIPQIINDFRLAARNAIKAGFDGVEIHGAHGYLLDQFMKDSINNRADQYGGTLENRCRFPLEVVEAVANEIGAERVGIRLSPFAQYLESSDSDPEALGLYMAEALNKYNILYAHYVEPRLVTSFESVATNKSLLPMRKAFKGSFLVAGGYDREDENAAIASGKADLVVYGRIFLANPDLPRRFELNAPLNKYDRNTFYSSDSDPVVGYTDYPFLE
A9NT17_______________EENQSKQQIPLITPYQLGPFSLSHRVVLAPLTRQRSYKCVPQPHAILYYSQRTSPGGLLIAEATGVSDTAQGYPDTPGIWTEEQVEAWKPIVNGVHEKGGVFFCQIWHTGRASHVDYQPNGQAPVSSTDRKISGQVVLPNGKDLADYSPPRALKIEEIPQIINDFRLAARNAIKAGFDGVEIHGAHGYLLDQFMKDSINNRIDQYGGTLENRCRFPLEVVEAVANEIGAERVGIRLSPFAQFLESSDSDPEALGLYMAETLNRYNILYAHYVEPRLVTTFEPVATNKSLLPMRKAFKGSFLVAGGYDREDGNAAIASGKADLVVYGRIFLANPDLPRRFELNASLNKYDRNTFYI--PDPVVGYTDYPFLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain