SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene38333

Length: 2107 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene38333
TCTCTCATGAACGGTTACCCTACAAATGACCCTCCATGCTCTTTAAATCGAGATCATGGACCAATCAGGTGTTAAGCCATAGATCAAGTGTCTATAATACTGAGGAGAGAATAAACCGTCGGATCACGTCATGTCTAGAACATATCGTGATTGTCGGATTGTAAGTTACAAATGTATACAGTAAAAAAACACACTTCACTTAATTCTACACTAGACCAAGTTATACTTAACTATTTCCTATGTGTCGAAATATCCTAACAGATTCATATTTGTATGCCCCAAAATAATAAGTAAAATCACATGATTACAAAATGGTTGAAGTACCCGTTGATGGAATACCCACCTTCCTTCAACACTGAATGTCGAATGGAGAAAGAAATCTGATCAAAGCAATATGTGGAGGGTCCATGGCATCATGTCAAGTTCTGATCAATAAGACCGTTGGCTAGTTCGCTGTCTAAGGAGGAGAAAAATTTGTCCTATGGGTTACCCACTTTTTGGTTGGTAACATTGGGCTCCAACTCAGGGACTTTTGCACACTATAAAGCGCATGATTCATGTACTCGAGCGAAGAGTGCGTGAGAACTCTAGCTATCCCCGAGCCTTCGTAGACCCATTTCTTTTATGCTCAAACCAACTTGTTGATGGCATATGTGTTGGGTGTTGATCATTACCCTTGTGATATAAGATTAAATAAAATAAAAAATAAAACATCAACTAACAATCTCTCTCTAGCATGCGAACACATCAATATGAATAATGATAAAAGTAGGTTGCGCACACACTACACAAATGCAATGCAACCATCTAAATGAGAATATTTATAGGGTTCCACTAAATAAGGTGAGATGCTTTTCTTCTTACATGAACATGTATGAGTGATAAAAGTAGGATGCACACACACTACACAAATGCAACGCAACCATCTAAATGAGAATATGCATAGGGTTCCACTAAATAAAGTGAGATGCTTTTCTTCTTACAAGGGAGGACAAAGGCTCACATATGTACCGGGTTCCACTAAATAAGGTGAGATGCTTTTCTTCTTACAAGTGAGGATAAAGGCGCACCATCAAGGTTGGTTATGTAAAAGTAACCTACCTCTACTTTGTCGTGGACCTGAAAAGGGTATGGGTTATCATCAGCAAGGACGAGATCTGGAGTTTAAGATAAGTTTATGCTAGTTCTAAATTCTTAGGGGAAATGGTAATTGGTTAAATTCCTTTTCCTAGGATCTAAAAGAATTTTCATTGAATTATTTAATAATTAAAATTAAAAACGATTTTCAAGAAAGTCCCAGTTAGCAGTAAAATTACAGAGACATGGTGAAATAGCCATCCATCACATTTGCTAATCAATGTACGAATTGGAGTCCAGAAATTTGGGATTATGATCAACAGAGATTTACAAGTCTCACCTCTTAGAAATTTGTACGATTTTTAAATGAATCTGTATAATTGAATATAGTATATACAAACGCTCTTTTCTCCTCAGGAAAATGATTATGAGAATATTATGTGGAGGGAGAGGATTCAAGGTTGTCAAGTCCACTTTCCCTCGGCATGAAACAAGATTTGATTGAAATAATTAAGAGGAGAAGGAACAAAAATTGGCTTAGTGGATGATCAAGGCAGTATACAAACCCTGGACATTATCTGGCTTGTGTTTATGTCGTGAAGGTGTATACAAATGTTCCTTGGGCAAGGAAATATGTGTAAAAAAGCTCTAGAAAGCGCTATCAGTTAATACAGCCCAGTAATTAAGATAATAATGATAAATTAGATAAATGGATCTTATTCAACGTCTTGTTTATGCTGGTTTTCTCTTTTTGATTGAGATTTTCACCGTAAGCTGCAAATTATAACATATACAAGGGCAATGCGTCGGAGCACTGCTTCCATTATAAGTTTCGTTTGATACTAATCTCGATTAGTTGGGTTCACCCTTGACAGAGATACAGTTCAAGATCTATTCAATGTGATGGGGGCATTATTTGCTGCTGTCTTGTTCGTTGGAGTCAATAATGCATCCTCAGTACAGCCAGTAGTTTCTGTAGAAAGAACCGTCTATTATCGGGAGAAGGCAACTGGAATGTATGCTGCCTTTC

Ace file of the UniGene sp_v3.0_unigene38333 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, subfamily G, member 15, group PDR protein PpABCG15 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RIX0_PHYPA	-	-	2.0e-14	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	ATP-binding cassette transporter, putative	-	-	4.25e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	5.583e-14	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	7.027e-09	-

Source	Gene names
Sma3	ABC1; At1g15210; At1g15520; At1g59870; At1g66950; At2g26910; At2g29940; At2g36380; At3g16340; B1090H08.39; F12C20.5; F1O11.1; F1O19.3; F23F1.14; F23H11.19; F9L1.15; GSVIVT00012684001; GSVIVT00016814001; GSVIVT00022062001; GSVIVT00024107001; GSVIVT00032521

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	lead ion transport	GO:0015692	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G29940.1	PDR3, ATPDR3 pleiotropic drug resistance 3 chr2:12760139-12766455 FORWARD LENGTH=1426	2.0e-14	72%
RefSeq	Arabidopsis thaliana	NP_180555.2	ABC transporter G family member 31 [Arabidopsis thaliana]	3.0e-14	72%
RefSeq	Populus trichocarpa	XP_002324959.1	predicted protein [Populus trichocarpa]	2.0e-14	65%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: Distance to subject end: 181 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 42 - 412

Fln protein: MGALFAAVLFVGVNNASSVQPVVSVERTVYYREKATGMYAAF

Protein Length: 43

Fln nts: TCTCTCATGAACGGTTACCCTACAAATGACCCTCCATGCTCTTTAAATCGAGATCATGGACCAATCAGGTGTTAAGCCATAGATCAAGTGTCTATAATACTGAGGAGAGAATAAACCGTCGGATCACGTCATGTCTAGAACATATCGTGATTGTCGGATTGTAAGTTACAAATGTATACAGTAAAAAAACACACTTCACTTAATTCTACACTAGACCAAGTTATACTTAACTATTTCCTATGTGTCGAAATATCCTAACAGATTCATATTTGTATGCCCCAAAATAATAAGTAAAATCACATGATTACAAAATGGTTGAAGTACCCGTTGATGGAATACCCACCTTCCTTCAACACTGAATGTCGAATGGAGAAAGAAATCTGATCAAAGCAATATGTGGAGGGTCCATGGCATCATGTCAAGTTCTGATCAATAAGACCGTTGGCTAGTTCGCTGTCTAAGGAGGAGAAAAATTTGTCCTATGGGTTACCCACTTTTTGGTTGGTAACATTGGGCTCCAACTCAGGGACTTTTGCACACTATAAAGCGCATGATTCATGTACTCGAGCGAAGAGTGCGTGAGAACTCTAGCTATCCCCGAGCCTTCGTAGACCCATTTCTTTTATGCTCAAACCAACTTGTTGATGGCATATGTGTTGGGTGTTGATCATTACCCTTGTGATATAAGATTAAATAAAATAAAAAATAAAACATCAACTAACAATCTCTCTCTAGCATGCGAACACATCAATATGAATAATGATAAAAGTAGGTTGCGCACACACTACACAAATGCAATGCAACCATCTAAATGAGAATATTTATAGGGTTCCACTAAATAAGGTGAGATGCTTTTCTTCTTACATGAACATGTATGAGTGATAAAAGTAGGATGCACACACACTACACAAATGCAACGCAACCATCTAAATGAGAATATGCATAGGGTTCCACTAAATAAAGTGAGATGCTTTTCTTCTTACAAGGGAGGACAAAGGCTCACATATGTACCGGGTTCCACTAAATAAGGTGAGATGCTTTTCTTCTTACAAGTGAGGATAAAGGCGCACCATCAAGGTTGGTTATGTAAAAGTAACCTACCTCTACTTTGTCGTGGACCTGAAAAGGGTATGGGTTATCATCAGCAAGGACGAGATCTGGAGTTTAAGATAAGTTTATGCTAGTTCTAAATTCTTAGGGGAAATGGTAATTGGTTAAATTCCTTTTCCTAGGATCTAAAAGAATTTTCATTGAATTATTTAATAATTAAAATTAAAAACGATTTTCAAGAAAGTCCCAGTTAGCAGTAAAATTACAGAGACATGGTGAAATAGCCATCCATCACATTTGCTAATCAATGTACGAATTGGAGTCCAGAAATTTGGGATTATGATCAACAGAGATTTACAAGTCTCACCTCTTAGAAATTTGTACGATTTTTAAATGAATCTGTATAATTGAATATAGTATATACAAACGCTCTTTTCTCCTCAGGAAAATGATTATGAGAATATTATGTGGAGGGAGAGGATTCAAGGTTGTCAAGTCCACTTTCCCTCGGCATGAAACAAGATTTGATTGAAATAATTAAGAGGAGAAGGAACAAAAATTGGCTTAGTGGATGATCAAGGCAGTATACAAACCCTGGACATTATCTGGCTTGTGTTTATGTCGTGAAGGTGTATACAAATGTTCCTTGGGCAAGGAAATATGTGTAAAAAAGCTCTAGAAAGCGCTATCAGTTAATACAGCCCAGTAATTAAGATAATAATGATAAATTAGATAAATGGATCTTATTCAACGTCTTGTTTATGCTGGTTTTCTCTTTTTGATTGAGATTTTCACCGTAAGCTGCAAATTATAACATATACAAGGGCAATGCGTCGGAGCACTGCTTCCATTATAAGTTTCGTTTGATACTAATCTCGATTAGTTGGGTTCACCCTTGACAGAGATACAGTTCAAGATCTATTCAATGTG_-_ATGGGGGCATTATTTGCTGCTGTCTTGTTCGTTGGAGTCAATAATGCATCCTCAGTACAGCCAGTAGTTTCTGTAGAAAGAACCGTCTATTATCGGGAGAAGGCAACTGGAATGTATGCTGCCTTTC

Fln Alignment:

CL1Contig374___QDLFNVMGALFAAVLFVGVNNASSVQPVVSVERTVYYREKATGMYAA
D5ACV1_______________QDLFNVLGAMYASTIFLGVSNSSTVQPVVGVQRTVFYREKAAGMYSA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain