SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene38172

Length: 4174 nt

UniGene Fasta

>sp_v3.0_unigene38172
TGGGTTGTATGGCTAAGGGTACGGTTGATCCTCCTTGGTTAGTGCCCTGAAATATTGCCGAGTACTACTGTCGGACCTTTATGTATATTGCGATCTATAGCACCTGACACTTCTTGAGACCATAGTTTCCTTGTCTCTCTCGCATCATCTTTGCCAGCTTAGATCTAGTAGGTTAGGTTCTGTCACAGCCGCAACAATCAGTTCCGCCATTCAGATCTATCAGATCCGCCATTCAGAGCTATCAGATCCGCCAATTAGATCTATCAGATTTTCCATTCATATCAAGGTGGTACCATTCACTTGTCAGCATCAAAATTTCAGGTGGTCCCAATTTTTTTTCACAGTAACGACAAGTGCATCGGATCTATGCATGGTACAAACCAAAGCTCAAGCTATGGCCAATGAGAAGATAGACACCCTTGAACAAAATTTGGAGGCATTAGCGAAGCAGATCCAGACCTTAAATGACACAATCACAAAGGGCAAGTCGGGGGAACAATCAGAGGCATATGATTTTAATGAAAACCTTGAGGGCGAGTCTAGCCATTCTCTTCACTTCTATGGAAACCACCAACAGTCCCAGCATCGACCACCCAAGCTGGACATGTATAAATTTGATGGCTCTCATTCGGCCATATGGCTAGCACAAATGGAGGAATATTTCACATTGAATCACATCAGAGATGATGCAACTAAGCTAAGTGTGGGAACCTTGTACTTGGACCAAGAAAGATGGCAATGGTGGCAGTGGCATCAACGCTACTATGTAAGGCCAATGACTTGGTAGATATCCTCAAAATCCCTTTCTGATCGCTTTGACCATGAATCTAACTTTTTGGGTCGTCTTACTAAGCTCCGACAGATAGGCACAATGCAAGAATATATTAAAGCCTTTGAAGCATTAGCCTTCCGCACAGGAGGTCTAGCAGATGAATTCTACTTGGAATCTTTTGTCACTGGTCTCAAAGACGCCATACAAGCCCACATCGGATTGCAACACCCAGTCTCATGGCTGGCAGCTTGCAAGATAGCTCGTGAAGTAGAACGTGCGTTAGCGGCCTAGTCGACTTGTCCAAATTTCATAGCCAAGGGATGCCCCACCCAGGCTCCGAGCACTACCCAAACACTTAAGGTTCAAAAGGTGTCACCAGCGGAAATGGCGGAAAGAAGAAAGCAAGGATTGTGTTACTACTGTGATGAGAAATACTCCCTGGGGCATAAATGCAAGGAACCCAAATTCTTTCAAATTGATGCTACTGATCACAGTTCATATGAGGAAGCCCCACCAATTGAGGGACTAGAGGAGGAAGATGAGGACAACCAGCTGGACAATGAGCTCCCAGCTACACCTGAAGAACCAGTTATCTTGCTTCATGGTTTGGCAGGAATTTCTTCTCCCCAAACTCTCAAAATCAGAGGTTTTATTAAGCTTCGCCTGTAGTAGTCTTGATTGATAGTGGCAGTACGCATAACTTTATCCATCAAAGAGTCGCTGAAGCAGTGCATTGTTTTGTCAGAGAAGTCTTTAATTTCCAGGTCCAGATTGCTGATGGGGGGACAATGAAATGTGAAGGCCACTGTAAAAATGTCAAACATCAAATGGGGGATTATCACGTAAAGATCCACATGTTTGCCATCAACATGGGTGGGTGTGACATTGTCTTGGGTGCTAAATGGATCCGCACACTCTGCCCAATCACAATGGATTTCTAGGAGTTATATATGAGCTTTAAGCAGAATAACCACACACATGCCCTTCGCGGACTCCAGGCAGGTGCTCCTTCTATCATCAGCTCGCATAGGATGGAAAAATTGTTAAAAAAGGGTCACCATGGAGTTATAGCCCAATTTAATGCCATCTAGGCATTCAAACCCACTTCTCTTCATATTCATCCTGAGATGTAACAGGTCTTAAACAATCATCTGTAGGTCTTTGACAAGCCTCATGAGCTTCCACCCTCGAGAGGGGAACATGATCATAGCATTATTTTGGTCCCAGGGGCACAACCACCAAATGTGTTCCACTCCCATATTGGCACTACCCGACTTCACCAAATCTTTTGTAATTGAATATGATGCTTCAGGTACGGGTATTGGGGCTTGTCTTAATGTAGGAAGGTCGACCCTTGACCTTCACTAGCCAACAACTAAGTGGGACAAATCTGGGACAATCTACCTATGAGAAGGAGATGATGGCCATCTTACATGCAGTGGATACCTGGCGACCATACTTATTGGGGCGGCGTTTCCACATCCGCACAGACCATCAAAGCCTTAAATATTTTTTGGAGCAACGCCTATCCTCGCCACAACAAAATAAATGGCTAGCCAAAATGTTGGGATATGATTATGAGATAATTTACAAGAAAGGGCGCGAAAATGTCGTAGTGGATGCTTTATCACATCAATTTGAGGAGGAAAGCACCCTGCTAGCAATCTCTCTTCCCATTCCAGAGTGGATTGAAGAGGCTCGCAAGGAATGGTTTTCACATCCTTTGCTTTCCCAACTCATTAATAAATTGCAGGTGGATCCAAATTCCATAGTGGGCTACTCTTGGCAGGATGAGATTCTTCGCTACAAGGACAAAGTAGTGATATCACCAACATCCACCCTCAAAAGTTGCATTTTGGCAGAGTTGCACTCATCTCCTACTGCAGGCCATTCAGGCTTTTAGAAGACTTATGCTCGCACTCGACGTTCATTCTTTTGGAGAGGCATGGAAAAGGACATTCTTACTTTTGTAGCTAAGTGTGATGTGTGTCAGTGCCACAAAGGAGAAACAGTCAAATCCCCAGGCACATTACATCCATTGCCCATGCCTGCCTCAATCTGGACAAAGGTTTCTATGGATTTCATTACGGGTCTTCCGAAGTCAGGTAACAAGTCAGTGATCATGGTGGTTGTGGACAGACTTTCTAAGTATGTTAATTTTAGGTATGTTCTATGCTAGTGCAATTTATTTAATTTTTACTATCAGCAATCACATCAGCATTAAAGTAAATTGCAGATAGAACATAAACATAAATCGCAGAAGACAAGCCAAGACAAGAGGACACAAGATGTGGTGCCAGCCAGGGACAAACCCCAATGTGGGGAAACCTTTGATCAATTCTTCTTTTATGTTCGTCAAAGTTCAGCAGAGAAAGTGAGAGAGATATACATTTACAATAGAAGTCAACATTTTTACTTTTGATATTTGCATGAAATCAGTTGAAGACATATTGCTTCAACTGATTCTCTAAGGTGACTCCTTCACCTATCATAGTGCTGCCGCTCATCCATTTGCTGCACCTTACTGTGTAGCACCATGCAGTACCATCACAGTGCTGGACCTAGATGACTAAGCTGCTCTCATCTGCTCTCATCATCATGCTGCTCTTTACTAACATGCCCATTACGCTGCATCTTCCTTCATCATGCAGCCCTATTCATCATCATGCTACTCCTTACTTAACATGCCCATTATGCTGCATCTTCCTTCATCATTCCTTCCGCTGAGATCATCATGATGCACATTCACATTAGTGCCACCGAGATCAAGTTTGTGAGATCATCTTTTATACCACCATTCACTGAGATATGAGAGTTTTATGGAGATCAAGAAATGATCATATAACTGTCATAAGACTGTAATTAAGATGGAGATCATTCCTTGTTATTAATATATACTCATTGATCACCAAGTATAAGTCATATCCTTACAGATCTGACTGGGAGAATGCTGAGATATATTATGAAATCATAGTGATCTTCTATACTATAATAGTTATGCAGAGAACGTAGCCCTTCTACTTCAAACCCTAACCACTGCTGGTCATTATGCTGAAACTGCTACAGGAATACCACCTGGATCTACTTCATCAATGGTATGTCAAGATTGTAATGTTGCTTCAATGATGACTGAGATCACTGAGACTGGGAGGAGGTTGAAACTATAACAAGACAGTGAGGAGGCCGAAACTCCATGACTGCGTATAACTGTTTTCATTAACTGTGTATAAGGTGTTTCCATGTCTGCTATGAAAGAGTCTCCATGACTGTGTATGGATGTCTCTATGATCTGCATATAAGTGTCTTCATGAACTACGTATAAGGAGTCTCCATGACTGCGTATGGATGTCTCTATGACCTGCGTATAAGAGTCTTCAAGAACTGCGTATAAGAAGCCTCCAT

Ace file of the UniGene sp_v3.0_unigene38172

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Sma3	Retrotransposon protein, putative, unclassified	-	-	6.04e-08	-

Source	Gene names
Sma3	At2g05610; H0124B04.16; H0321H01.8; H0502G05.7; LOC_Os03g05340; LOC_Os03g47870; LOC_Os10g40400; LOC_Os11g35200; LOC_Os11g45000; LOC_Os11g45920; LOC_Os12g17360; LOC_Os12g18080; LOC_Os12g24050; LOC_Os12g43850; MtrDRAFT_AC150244g37v2; OSJNBa0004B23.3; OSJNBa

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	SNAP receptor activity	GO:0005484	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABB2

Fln msg:

Fln protein: MEKDILTFVAKCDVCQCHKGETVKSPGTLHPLPMPASIWTKVSMDFITGLPKSGNKSVIMVVVDRLSKYVNFRYVLC*

Protein Length: 79

Fln nts: TGGGTTGTATGGCTAAGGGTACGGTTGATCCTCCTTGGTTAGTGCCCTGAAATATTGCCGAGTACTACTGTCGGACCTTTATGTATATTGCGATCTATAGCACCTGACACTTCTTGAGACCATAGTTTCCTTGTCTCTCTCGCATCATCTTTGCCAGCTTAGATCTAGTAGGTTAGGTTCTGTCACAGCCGCAACAATCAGTTCCGCCATTCAGATCTATCAGATCCGCCATTCAGAGCTATCAGATCCGCCAATTAGATCTATCAGATTTTCCATTCATATCAAGGTGGTACCATTCACTTGTCAGCATCAAAATTTCAGGTGGTCCCAATTTTTTTTCACAGTAACGACAAGTGCATCGGATCTATGCATGGTACAAACCAAAGCTCAAGCTATGGCCAATGAGAAGATAGACACCCTTGAACAAAATTTGGAGGCATTAGCGAAGCAGATCCAGACCTTAAATGACACAATCACAAAGGGCAAGTCGGGGGAACAATCAGAGGCATATGATTTTAATGAAAACCTTGAGGGCGAGTCTAGCCATTCTCTTCACTTCTATGGAAACCACCAACAGTCCCAGCATCGACCACCCAAGCTGGACATGTATAAATTTGATGGCTCTCATTCGGCCATATGGCTAGCACAAATGGAGGAATATTTCACATTGAATCACATCAGAGATGATGCAACTAAGCTAAGTGTGGGAACCTTGTACTTGGACCAAGAAAGATGGCAATGGTGGCAGTGGCATCAACGCTACTATGTAAGGCCAATGACTTGGTAGATATCCTCAAAATCCCTTTCTGATCGCTTTGACCATGAATCTAACTTTTTGGGTCGTCTTACTAAGCTCCGACAGATAGGCACAATGCAAGAATATATTAAAGCCTTTGAAGCATTAGCCTTCCGCACAGGAGGTCTAGCAGATGAATTCTACTTGGAATCTTTTGTCACTGGTCTCAAAGACGCCATACAAGCCCACATCGGATTGCAACACCCAGTCTCATGGCTGGCAGCTTGCAAGATAGCTCGTGAAGTAGAACGTGCGTTAGCGGCCTAGTCGACTTGTCCAAATTTCATAGCCAAGGGATGCCCCACCCAGGCTCCGAGCACTACCCAAACACTTAAGGTTCAAAAGGTGTCACCAGCGGAAATGGCGGAAAGAAGAAAGCAAGGATTGTGTTACTACTGTGATGAGAAATACTCCCTGGGGCATAAATGCAAGGAACCCAAATTCTTTCAAATTGATGCTACTGATCACAGTTCATATGAGGAAGCCCCACCAATTGAGGGACTAGAGGAGGAAGATGAGGACAACCAGCTGGACAATGAGCTCCCAGCTACACCTGAAGAACCAGTTATCTTGCTTCATGGTTTGGCAGGAATTTCTTCTCCCCAAACTCTCAAAATCAGAGGTTTTATTAAGCTTCGCCTGTAGTAGTCTTGATTGATAGTGGCAGTACGCATAACTTTATCCATCAAAGAGTCGCTGAAGCAGTGCATTGTTTTGTCAGAGAAGTCTTTAATTTCCAGGTCCAGATTGCTGATGGGGGGACAATGAAATGTGAAGGCCACTGTAAAAATGTCAAACATCAAATGGGGGATTATCACGTAAAGATCCACATGTTTGCCATCAACATGGGTGGGTGTGACATTGTCTTGGGTGCTAAATGGATCCGCACACTCTGCCCAATCACAATGGATTTCTAGGAGTTATATATGAGCTTTAAGCAGAATAACCACACACATGCCCTTCGCGGACTCCAGGCAGGTGCTCCTTCTATCATCAGCTCGCATAGGATGGAAAAATTGTTAAAAAAGGGTCACCATGGAGTTATAGCCCAATTTAATGCCATCTAGGCATTCAAACCCACTTCTCTTCATATTCATCCTGAGATGTAACAGGTCTTAAACAATCATCTGTAGGTCTTTGACAAGCCTCATGAGCTTCCACCCTCGAGAGGGGAACATGATCATAGCATTATTTTGGTCCCAGGGGCACAACCACCAAATGTGTTCCACTCCCATATTGGCACTACCCGACTTCACCAAATCTTTTGTAATTGAATATGATGCTTCAGGTACGGGTATTGGGGCTTGTCTTAATGTAGGAAGGTCGACCCTTGACCTTCACTAGCCAACAACTAAGTGGGACAAATCTGGGACAATCTACCTATGAGAAGGAGATGATGGCCATCTTACATGCAGTGGATACCTGGCGACCATACTTATTGGGGCGGCGTTTCCACATCCGCACAGACCATCAAAGCCTTAAATATTTTTTGGAGCAACGCCTATCCTCGCCACAACAAAATAAATGGCTAGCCAAAATGTTGGGATATGATTATGAGATAATTTACAAGAAAGGGCGCGAAAATGTCGTAGTGGATGCTTTATCACATCAATTTGAGGAGGAAAGCACCCTGCTAGCAATCTCTCTTCCCATTCCAGAGTGGATTGAAGAGGCTCGCAAGGAATGGTTTTCACATCCTTTGCTTTCCCAACTCATTAATAAATTGCAGGTGGATCCAAATTCCATAGTGGGCTACTCTTGGCAGGATGAGATTCTTCGCTACAAGGACAAAGTAGTGATATCACCAACATCCACCCTCAAAAGTTGCATTTTGGCAGAGTTGCACTCATCTCCTACTGCAGGCCATTCAGGCTTTTAGAAGACTTATGCTCGCACTCGACGTTCATTCTTTTGGAGAGGC_-_ATGGAAAAGGACATTCTTACTTTTGTAGCTAAGTGTGATGTGTGTCAGTGCCACAAAGGAGAAACAGTCAAATCCCCAGGCACATTACATCCATTGCCCATGCCTGCCTCAATCTGGACAAAGGTTTCTATGGATTTCATTACGGGTCTTCCGAAGTCAGGTAACAAGTCAGTGATCATGGTGGTTGTGGACAGACTTTCTAAGTATGTTAATTTTAGGTATGTTCTATGCTAG___TGCAATTTATTTAATTTTTACTATCAGCAATCACATCAGCATTAAAGTAAATTGCAGATAGAACATAAACATAAATCGCAGAAGACAAGCCAAGACAAGAGGACACAAGATGTGGTGCCAGCCAGGGACAAACCCCAATGTGGGGAAACCTTTGATCAATTCTTCTTTTATGTTCGTCAAAGTTCAGCAGAGAAAGTGAGAGAGATATACATTTACAATAGAAGTCAACATTTTTACTTTTGATATTTGCATGAAATCAGTTGAAGACATATTGCTTCAACTGATTCTCTAAGGTGACTCCTTCACCTATCATAGTGCTGCCGCTCATCCATTTGCTGCACCTTACTGTGTAGCACCATGCAGTACCATCACAGTGCTGGACCTAGATGACTAAGCTGCTCTCATCTGCTCTCATCATCATGCTGCTCTTTACTAACATGCCCATTACGCTGCATCTTCCTTCATCATGCAGCCCTATTCATCATCATGCTACTCCTTACTTAACATGCCCATTATGCTGCATCTTCCTTCATCATTCCTTCCGCTGAGATCATCATGATGCACATTCACATTAGTGCCACCGAGATCAAGTTTGTGAGATCATCTTTTATACCACCATTCACTGAGATATGAGAGTTTTATGGAGATCAAGAAATGATCATATAACTGTCATAAGACTGTAATTAAGATGGAGATCATTCCTTGTTATTAATATATACTCATTGATCACCAAGTATAAGTCATATCCTTACAGATCTGACTGGGAGAATGCTGAGATATATTATGAAATCATAGTGATCTTCTATACTATAATAGTTATGCAGAGAACGTAGCCCTTCTACTTCAAACCCTAACCACTGCTGGTCATTATGCTGAAACTGCTACAGGAATACCACCTGGATCTACTTCATCAATGGTATGTCAAGATTGTAATGTTGCTTCAATGATGACTGAGATCACTGAGACTGGGAGGAGGTTGAAACTATAACAAGACAGTGAGGAGGCCGAAACTCCATGACTGCGTATAACTGTTTTCATTAACTGTGTATAAGGTGTTTCCATGTCTGCTATGAAAGAGTCTCCATGACTGTGTATGGATGTCTCTATGATCTGCATATAAGTGTCTTCATGAACTACGTATAAGGAGTCTCCATGACTGCGTATGGATGTCTCTATGACCTGCGTATAAGAGTCTTCAAGAACTGCGTATAAGAAGCCTCCAT

Fln Alignment:

CL1Contig182___RRSFFWRGMEKDILTFVAKCDVCQCHKGETVKSPGTLHPLPMPASIWTKVSMDFITGLP--KSGNKSVIMVV
D5ABB2_______________QKYFYWSKLRHDVSKYIRSCSACSIAK-PAIKKQGLYTPLPTLDRPWESISMDYMSGLPSTKHGNDYVFVVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain