SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene38050

Length: 391 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene38050
TGGCTTTATATTTAACTTAGTTCTTGCATCAATAGAAGCCAGAGGGGACACTGTTGATTTGATGTAGTCAAAAACTTCTGCTCCATCCTCTGCATGCAAATGTGTGGCAGGAAGAGAATATGTTTCTAAAAGAATGTCTCGTTCGGTCCAGATCCCTTGACAGTTGTAAATGTGGCACCATGGATCATCACTGTGGCAGCAAGCACCATTGATAGACAATATCCTTCACATGCTATTCTTGGAAACAACAGAAAATATATAGGGCTAAGCCTATCCCAGTTCGAACTGCCGAAGGGAAAAATGTATCCATTGGTATCATCAGCTGATGTCAGAGCTCCACATGCAAAGGAAACTGATGCACAACTCTGCCTCCAAGGTGCTCTAGATCCAG

Ace file of the UniGene sp_v3.0_unigene38050 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	subtilisin-like serine protease AIR3 [Arabidopsis thaliana]	-	-	5.0e-17	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	Subtilisin-like protease	-	-	2.664e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	5.8e-06	-

Source	Gene names
Sma3	AIR3; At2g04160; GSVIVT00011159001; GSVIVT00011830001; GSVIVT00011831001; GSVIVT00011833001; GSVIVT00012462001; GSVIVT00012463001; GSVIVT00012466001; POPTRDRAFT_558450; POPTRDRAFT_573140; POPTRDRAFT_829963; RCOM_0267570; RCOM_0820330; RCOM_0851880; RCOM_1

Source	GOs	Term	Type	Identity
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	lateral root morphogenesis	GO:0010102	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G04160.1	AIR3 Subtilisin-like serine endopeptidase family protein chr2:1401450-1407694 REVERSE LENGTH=772	4.0e-21	52%
RefSeq	Arabidopsis thaliana	NP_565309.2	Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana]	5.0e-21	52%
RefSeq	Populus trichocarpa	XP_002306266.1	predicted protein [Populus trichocarpa]	9.0e-24	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPS1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 284 aas, your sequence is shorter than subject: 130 - 690

Fln protein: WLYI*LSSCINRSQRGHC*FDVVKNFCSILCMQMCGRKRICF*KNVSFGPDPLTVVNVAPWIITVAASTIDRQYPSHAILGNNRKYIGLSLSQFELPKGKMYPLVSSADVRAPHAKETDAQLCLQGALDP

Protein Length: 131

Fln nts: TGGCTTTATATTTAACTTAGTTCTTGCATCAATAGAAGCCAGAGGGGACACTGTTGATTTGATGTAGTCAAAAACTTCTGCTCCATCCTCTGCATGCAAATGTGTGGCAGGAAGAGAATATGTTTCTAAAAGAATGTCTCGTTCGGTCCAGATCCCTTGACAGTTGTAAATGTGGCACCATGGATCATCACTGTGGCAGCAAGCACCATTGATAGACAATATCCTTCACATGCTATTCTTGGAAACAACAGAAAATATATAGGGCTAAGCCTATCCCAGTTCGAACTGCCGAAGGGAAAAATGTATCCATTGGTATCATCAGCTGATGTCAGAGCTCCACATGCAAAGGAAACTGATGCACAACTCTGCCTCCAAGGTGCTCTAGATCCAG

Fln Alignment:

Contig38050___GPDPLTVVNVAPWIITVAASTIDRQYPSHAILGNNRKYIGLSL--SQFELPKGKMYPLVSSADVRAPHAKETDAQLCLQGALD
C0PPS1_______________GPDPISLSNVAPWIATIGAGTLDRDFPAYVELGNGLNFTGVSLYHGRRGLPSGEQVPLVYFGSNTSAGSRSA-TNLCFAGSLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain