SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37912

Length: 2223 nt

UniGene Fasta

>sp_v3.0_unigene37912
CTACGCTTCATCGTACCTTCTCCAAGCTCCATTTTATAACCCTCCCTCTCTCTCAGAATCCCGTCACGAAACCCTCGCGTGGTGCATAACCATTGTGTATACTGCGTACTATTACCTACCGGGCGAAGCTAGAAAAATGGTGCTTTTTAGCGTAAATAAGAAGGAAACCTCTCCTTACGATGGACAAAAACCAGGAACCTCTGGCCTCAGGAAGAAGGTCACAGTCTTCAAGCAACAGAATTACTTGCACAATTTTGTTCAAGCAACTTTCGATGCACTGTCAGTGGAGAAAATAAAAGGTTCCAGAATTGTTGTCTCTGGCGATGGCCGCTACTTTTCGGAAGAGGCTATTCAGATAATAATAAAAATGGCAGCTGCAAATGGAGTGAGGAGTGTTTGGGTAGGCCAAAATGGACTGCTTTCAACACCTGCAGTTTCAGCAGTTATACGCAATAGAATTGGAGCAGATGGAGAAAAAGCATCAGGAGCTTTTATTTTGACGGCCAGCCATAATCCAGGAGGTCCAAATGAGGACTTTGGAATAAAGTACAACATGGAAAATGGGGGGCCAGCTCCTGAAGGGATTACTGACAAGATATACGAGAATACTAAAACAATAAAGGAGTATTTTACCGCAGAAGATCTCCCAGATGTAGACATATCAACCATAGGCATAACAACTTTTGGTGGTCCCGAGGGACCTTTTGATGTGGATGTCTTTGATCCCACTGAAGATTATGTTAAACTGATGAAGACTATATTTGACTTCGGAGCTATTCAAAAGCTGCTTACATACCCCAAATTCACGTTCTGCTATGATGCACTTCATGGAGTGGCTGGGATATATGCCAAAAGGATTTTTGTGGAGGAGCTGTCTGCTAGTGAGAGCTCATTAATAAATTGCACTCCTAAGGATGATTTTGGAGGAAGTCATCCAGACCCAAATTTAACATATGCCAAGGAGTTGGTTACCCGGATGGGATTGGGTAAACAAGCTCCTGATTCAGAACCACCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGTAATATGGTTCTTGGCAAGAGGTTTTTTGTGACTCCATCAGATTCTGTTGCCATCATTGCAGCAAATGCAGTTGAAGCCATTCCATACTTCAGCTCTGGATTGAAAGGTGTTGCAAGAAGCATGCCGACATCAGCTGCACTTGATGTAGTTGCGAAAAGTCTTAATCTTAGGTTTTTTGAGGTGCCCACTGGCTGGAAGTTTTTTGGAAATTTAATGGATGCTGGAATGTGTTCTGTTTGTGGTGAAGAGAGTTTCGGCACTGGTTCTGACCATATCCGAGAGAAGGATGGAGTCTGGGCAGTTTTAGCATGGCTTTCAATTCTAGCTTACAAAAATAAGGATAACCTTGATGGCGGGAAGCTTGTCACTGTAGAGGACATAGTCCGTAACCATTGGGCTTCTTATGGTCGCCACTATTATACACGCTATGACTATGAAAATGTTGATGCAGGTGCTGCCAAGGAGCTCATGTCACATTTAATTAAGCTGCAGTCTTCTCTCCCCGAAGTTAACAAATTAATTAAGGAAGTGAGGCCAGATGTTTCTGGTGTCGTGGATGCCGATGAATTTGAATACAAAGATCCGGTTGATGGTTCTGTTTCCAAACACCAGGGTGTACGCTATCTTTTTGAAGATGGATCTCGACTGGTGTTCCGGCTTTCTGGTACTGGATCTGTAGGTGCAACCATTCGGTTGTATATTGAGCAATATGAAGCGGATTCCACCAAGATCGGACGTGATTCACAAGTGGCTCTTGGTCCTTTGGTGGAAGTAGCTTTACGGCTTTCAAAGATGGAAGAATTTACTGGTCGCTCGAGCCCCACTGTAATCACATGAGTTATAGGAAATATTATGAATGCAATCGAGGAGTTCAGGCTTCTCTTTGGGAGGAATAGATCATGACCAAGCTGTGTGTTAAAAGTTTTCTTACATCTGATTAATAAACAGATTATACTGTGTATTATTGTGGAATGTTTTTGCAATAGAGAAAATCTTGCGAAAATTTAATTAAACAGAATATACTATGTAATATTGTGGCACATTTTTGCGATAGAGAAAATTTTGCGAAAATTTAATAAAACCCTTGAAGATGGTTTTGCCCCTGACTGCACGATAGCTTTGTTTTTGTAAATCTAGACTAAGATAAAATATTGTTTGCAAATTCCTTTGCC

Ace file of the UniGene sp_v3.0_unigene37912

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglucomutase [Bambusa oldhamii]	-	-	81%
FL-Next	sp=Phosphoglucomutase, cytoplasmic 1; Zea mays (Maize).	-	-	81%
Sma3	Chromosome chr1 scaffold_5, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00030550001;

Source	GOs	Term	Type	Identity
Sma3	intramolecular transferase activity, phosphotransferases	GO:0016868	Molecular Function	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	IPR005844	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	IPR016055	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	IPR005845	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain III	IPR005846	-	-
Sma3	Alpha-D-phosphohexomutase, C-terminal	IPR005843	-	-
Sma3	Alpha-D-phosphohexomutase, conserved site	IPR016066	-	-
Sma3	Alpha-D-phosphohexomutase superfamily	IPR005841	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G70730.3	PGM2 Phosphoglucomutase/phosphomannomutase family protein chr1:26669020-26673166 REVERSE LENGTH=662	83%
RefSeq	Arabidopsis thaliana	NP_001154465.1	phosphoglucomutase [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002315869.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P93804

Fln msg:

Fln protein: MVLFSVNKKETSPYDGQKPGTSGLRKKVTVFKQQNYLHNFVQATFDALSVEKIKGSRIVVSGDGRYFSEEAIQIIIKMAAANGVRSVWVGQNGLLSTPAVSAVIRNRIGADGEKASGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDKIYENTKTIKEYFTAEDLPDVDISTIGITTFGGPEGPFDVDVFDPTEDYVKLMKTIFDFGAIQKLLTYPKFTFCYDALHGVAGIYAKRIFVEELSASESSLINCTPKDDFGGSHPDPNLTYAKELVTRMGLGKQAPDSEPPEFGAAADGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSSGLKGVARSMPTSAALDVVAKSLNLRFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGVWAVLAWLSILAYKNKDNLDGGKLVTVEDIVRNHWASYGRHYYTRYDYENVDAGAAKELMSHLIKLQSSLPEVNKLIKEVRPDVSGVVDADEFEYKDPVDGSVSKHQGVRYLFEDGSRLVFRLSGTGSVGATIRLYIEQYEADSTKIGRDSQVALGPLVEVALRLSKMEEFTGRSSPTVIT*

Protein Length: 585

Fln nts: CTACGCTTCATCGTACCTTCTCCAAGCTCCATTTTATAACCCTCCCTCTCTCTCAGAATCCCGTCACGAAACCCTCGCGTGGTGCATAACCATTGTGTATACTGCGTACTATTACCTACCGGGCGAAGCTAGAAAA_-_ATGGTGCTTTTTAGCGTAAATAAGAAGGAAACCTCTCCTTACGATGGACAAAAACCAGGAACCTCTGGCCTCAGGAAGAAGGTCACAGTCTTCAAGCAACAGAATTACTTGCACAATTTTGTTCAAGCAACTTTCGATGCACTGTCAGTGGAGAAAATAAAAGGTTCCAGAATTGTTGTCTCTGGCGATGGCCGCTACTTTTCGGAAGAGGCTATTCAGATAATAATAAAAATGGCAGCTGCAAATGGAGTGAGGAGTGTTTGGGTAGGCCAAAATGGACTGCTTTCAACACCTGCAGTTTCAGCAGTTATACGCAATAGAATTGGAGCAGATGGAGAAAAAGCATCAGGAGCTTTTATTTTGACGGCCAGCCATAATCCAGGAGGTCCAAATGAGGACTTTGGAATAAAGTACAACATGGAAAATGGGGGGCCAGCTCCTGAAGGGATTACTGACAAGATATACGAGAATACTAAAACAATAAAGGAGTATTTTACCGCAGAAGATCTCCCAGATGTAGACATATCAACCATAGGCATAACAACTTTTGGTGGTCCCGAGGGACCTTTTGATGTGGATGTCTTTGATCCCACTGAAGATTATGTTAAACTGATGAAGACTATATTTGACTTCGGAGCTATTCAAAAGCTGCTTACATACCCCAAATTCACGTTCTGCTATGATGCACTTCATGGAGTGGCTGGGATATATGCCAAAAGGATTTTTGTGGAGGAGCTGTCTGCTAGTGAGAGCTCATTAATAAATTGCACTCCTAAGGATGATTTTGGAGGAAGTCATCCAGACCCAAATTTAACATATGCCAAGGAGTTGGTTACCCGGATGGGATTGGGTAAACAAGCTCCTGATTCAGAACCACCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGTAATATGGTTCTTGGCAAGAGGTTTTTTGTGACTCCATCAGATTCTGTTGCCATCATTGCAGCAAATGCAGTTGAAGCCATTCCATACTTCAGCTCTGGATTGAAAGGTGTTGCAAGAAGCATGCCGACATCAGCTGCACTTGATGTAGTTGCGAAAAGTCTTAATCTTAGGTTTTTTGAGGTGCCCACTGGCTGGAAGTTTTTTGGAAATTTAATGGATGCTGGAATGTGTTCTGTTTGTGGTGAAGAGAGTTTCGGCACTGGTTCTGACCATATCCGAGAGAAGGATGGAGTCTGGGCAGTTTTAGCATGGCTTTCAATTCTAGCTTACAAAAATAAGGATAACCTTGATGGCGGGAAGCTTGTCACTGTAGAGGACATAGTCCGTAACCATTGGGCTTCTTATGGTCGCCACTATTATACACGCTATGACTATGAAAATGTTGATGCAGGTGCTGCCAAGGAGCTCATGTCACATTTAATTAAGCTGCAGTCTTCTCTCCCCGAAGTTAACAAATTAATTAAGGAAGTGAGGCCAGATGTTTCTGGTGTCGTGGATGCCGATGAATTTGAATACAAAGATCCGGTTGATGGTTCTGTTTCCAAACACCAGGGTGTACGCTATCTTTTTGAAGATGGATCTCGACTGGTGTTCCGGCTTTCTGGTACTGGATCTGTAGGTGCAACCATTCGGTTGTATATTGAGCAATATGAAGCGGATTCCACCAAGATCGGACGTGATTCACAAGTGGCTCTTGGTCCTTTGGTGGAAGTAGCTTTACGGCTTTCAAAGATGGAAGAATTTACTGGTCGCTCGAGCCCCACTGTAATCACATGA___GTTATAGGAAATATTATGAATGCAATCGAGGAGTTCAGGCTTCTCTTTGGGAGGAATAGATCATGACCAAGCTGTGTGTTAAAAGTTTTCTTACATCTGATTAATAAACAGATTATACTGTGTATTATTGTGGAATGTTTTTGCAATAGAGAAAATCTTGCGAAAATTTAATTAAACAGAATATACTATGTAATATTGTGGCACATTTTTGCGATAGAGAAAATTTTGCGAAAATTTAATAAAACCCTTGAAGATGGTTTTGCCCCTGACTGCACGATAGCTTTGTTTTTGTAAATCTAGACTAAGATAAAATATTGTTTGCAAATTCCTTTGCC

Fln Alignment:

Contig37912___MVLFSVNKKETSPYDGQKPGTSGLRKKVTVFKQQNYLHNFVQATFDALSVEKIKGSRIVVSGDGRYFSEEAIQIIIKMAAANGVRSVWVGQNGLLSTPAVSAVIRNRIGADGEKASGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDKIYENTKTIKEYFTAEDLPDVDISTIGITTFGGPEGPFDVDVFDPTEDYVKLMKTIFDFGAIQKLLTYPKFTFCYDALHGVAGIYAKRIFVEELSASESSLINCTPKDDFGGSHPDPNLTYAKELVTRMGLGKQAPDSEPPEFGAAADGDADRNMVLGKRFFVTPSDSXXXXXXXXXXXXPYFSSGLKGVARSMPTSAALDVVAKSLNLRFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGVWAVLAWLSILAYKNKDNLDGGKLVTVEDIVRNHWASYGRHYYTRYDYENVDAGAAKELMSHLIKLQSSLPEVNKLIKEVRPDVSGVVDADEFEYKDPVDGSVSKHQGVRYLFEDGSRLVFRLSGTGSVGATIRLYIEQYEADSTKIGRDSQVALGPLVEVALRLSKMEEFTGRSSPTVIT
P93804_______________MGLFTVTKKATTPFDGQKPGTSGLRKKVTVFQQPHYLQNFVQSTFNALPVDQVRGATIVVSGDGRYFSKDAVQIITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATGAFILTASHNPGGPKEDFGIKYNMGNGGPAPESVTDKIFSNTTTISEYLISEDLPDVDISVVGVTSFSGPEGPFDVDVFDSSVDYIKLMKTIFDFEAIKKLLTSPKFTFCYDALHGVAGAYAKHIFVEELGADESSLLNCVPKEDFGGGHPDPNLTYAKELVERMGLGKSSSNVEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVQSIPYFASGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDAGMCSICGEESFGTGSDHIREKDGIWAVLAWLSIIAFKNKDNLGGDKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLVKEIRSDVSEVVAADEFEYKDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRVYIEQYERDSSKTGRDSQDALAPLVDVALKLSKMQEYTGRSAPTVIT

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1784	4		95		0.995881
1785			95	4	0.995881
1786	95			4	0.996252
1994	92			7	0.999602
2074	50	50			1.0
2079		3		96	0.988939
2104	42			57	1.0
2108	92		7		0.999999
2127	45			54	1.0
2129	47	2		50	1.0
2132	65			34	1.0
2160	18	9	72		0.999994
2164			88	11	0.923564
2209	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain